- Transcript 'KH2012:KH.L108.18.v1...'
Transcript Model
Transcript Id
KH2012:KH.L108.18.v1.B.nonSL7-1
Possible name(s)
GNB3; PWP1; SNRNP40
Gene model
Location
KhL108 [218,523 / 232,003]
Amino acid sequence
Length: 665
>KH.L108.18.v1.B.nonSL7-1
CLTCHHRYHSQQLFISYYYVTMDIDDDEIKGSSQIFCMTWVPKKAAKKVPDRILLSTDEL
KSVLNVKNQNEEDSESSDDEDVIDDDVTDDDVTNDDVRNDDVTNDDVTNNDITDDDDLKE
FDMDNYDDENDTLQDGGISSLVVFPTNEDDPYITKNINEDSEDEKEEMEALNICDDDNLL
INARCEADYNSLEIHVYNKKTQDFYVHHDVPLSGAPLCMEWLDFDPGNLEDEKTNDKGNF
VAVGNINSLIEVWDLDVLNTLEPAFVLGVPQEHHRKLLRSGESNFGHTDAVLDISWNSKS
RNKLLSASADHMVALWNLEVGKVEKFFTSHKEKVQCLSWKPDSTNYLVSGAFDGRVVIND
VRGQGSSKWKFKGEIERVVWNVTDPSYFAASTDSGMVYYCDVRVPKSLFHWRAHEKAIPS
MLMTSSALTSSLLYTASSDGRLKMWDLKGNIPKLIYERNMKMGMVHCMERNPDVLTTFGL
GGEKGGIRLWSPSSVFELSEHFPNAENVVATSDAPMAEDDLVMLNSAPDVLDVAGIGKST
EVDVRVTRMPRLKKKILSESNLNGNQKLKIKKSLKNLSISGENLMESDNTGVVGSECANK
KQRMVENCSQIISQTVDTNETADPTVVNDSSNVKDAQTKRVKSGSAKRRQRRKKTHTRKT
ALSGN
Nucleotide sequence
Length: 2,011
>KH2012:KH.L108.18.v1.B.nonSL7-1
ATGTTTAACTTGCCATCACAGATACCATAGTCAGCAATTGTTCATCTCATATTATTACGT
CACAATGGATATTGATGATGATGAAATAAAAGGTAGCAGCCAAATATTCTGCATGACATG
GGTCCCAAAAAAAGCCGCCAAGAAAGTTCCAGACAGAATCCTTTTATCGACTGATGAATT
AAAAAGCGTGTTGAATGTCAAGAACCAAAATGAAGAAGATTCTGAATCCAGTGATGATGA
AGATGTCATAGATGATGATGTCACAGATGATGATGTCACAAATGATGATGTTAGAAATGA
TGATGTCACAAATGATGATGTCACAAATAATGATATCACGGATGATGATGATTTGAAAGA
GTTCGACATGGATAATTATGATGATGAAAACGACACTTTACAAGACGGTGGAATTTCTTC
ATTAGTCGTCTTCCCCACCAACGAGGACGATCCTTATATTACAAAAAACATTAACGAAGA
TTCAGAAGATGAGAAAGAAGAAATGGAGGCATTAAATATTTGTGACGACGACAACTTACT
CATCAATGCTCGTTGCGAAGCCGATTATAACTCTCTGGAGATTCATGTTTACAACAAGAA
AACACAAGATTTCTATGTCCACCACGACGTCCCACTCTCTGGTGCTCCCTTGTGCATGGA
ATGGTTGGATTTTGATCCCGGAAATTTGGAAGACGAGAAAACAAACGATAAAGGTAACTT
TGTTGCTGTTGGAAACATCAACTCCCTTATTGAGGTTTGGGACTTAGATGTTTTAAATAC
ACTGGAACCTGCGTTTGTACTTGGTGTGCCGCAGGAACATCACAGAAAGTTGCTTCGTTC
GGGTGAGAGTAACTTCGGGCACACCGATGCTGTTCTGGACATTTCTTGGAACTCTAAATC
AAGAAACAAATTGTTATCTGCGTCCGCTGACCACATGGTGGCACTATGGAACCTCGAAGT
TGGGAAAGTGGAAAAGTTTTTCACGAGTCATAAAGAAAAGGTGCAATGTTTGAGTTGGAA
GCCTGACTCGACGAATTACCTCGTATCCGGCGCATTTGATGGGCGTGTCGTAATCAATGA
CGTCAGAGGTCAAGGGTCATCCAAGTGGAAGTTCAAAGGTGAAATTGAACGAGTGGTTTG
GAACGTCACCGATCCTTCATATTTTGCGGCAAGCACTGATTCCGGAATGGTATACTATTG
TGACGTCAGAGTACCGAAGTCTTTGTTTCACTGGCGAGCTCACGAGAAAGCGATACCCTC
GATGCTCATGACATCATCAGCGCTGACGTCATCACTCCTTTATACAGCGTCGAGTGATGG
AAGATTGAAAATGTGGGATTTGAAAGGAAATATACCGAAGTTGATATATGAAAGGAATAT
GAAAATGGGTATGGTCCATTGTATGGAGAGAAACCCTGATGTTCTAACTACATTTGGACT
TGGTGGGGAAAAAGGAGGGATACGATTATGGAGTCCTAGCAGTGTTTTTGAATTAAGCGA
GCACTTCCCAAACGCTGAGAATGTTGTTGCAACATCCGATGCTCCGATGGCAGAAGATGA
TCTTGTGATGTTGAACTCTGCTCCTGATGTCCTGGATGTTGCTGGGATCGGGAAGAGCAC
GGAAGTGGATGTTAGGGTCACAAGGATGCCAAGATTAAAGAAGAAGATTTTATCAGAATC
GAATTTAAACGGAAATCAAAAACTGAAAATCAAAAAATCTTTGAAAAATCTTTCAATTTC
TGGGGAAAATTTAATGGAATCGGACAATACGGGTGTTGTGGGTTCTGAATGCGCAAATAA
GAAGCAAAGAATGGTCGAAAACTGTTCCCAGATTATATCACAAACTGTAGATACGAATGA
AACAGCTGACCCTACGGTTGTGAATGATAGTTCTAACGTTAAAGACGCTCAAACTAAAAG
AGTTAAATCCGGTAGTGCGAAAAGGCGGCAGCGGCGAAAGAAAACGCATACACGTAAAAC
GGCATTAAGTGGAAATTAATAAATTTTATCC
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[32-506] 3.1E-39 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[194-491] 1.4E-39 |
| SMART |
WD40_repeat (IPR001680) - T[197-254] 97.0 - T[274-317] 6.2E-5 - T[320-360] 2.7E-4 - T[362-401] 85.0 - T[404-446] 0.23 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[284-326] 11.277 - T[327-362] 9.305 - T[411-448] 9.706 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[284-500] 21.146 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[304-318] . - T[433-447] . |
| Pfam |
WD40_repeat (IPR001680) - T[325-358] 0.16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PWP1_HUMAN | 38.9 % | 317 | 1.04E-100 |