- Transcript 'KH2012:KH.L108.18.v1...'
Transcript Model
Transcript Id
KH2012:KH.L108.18.v1.B.nonSL5-1
Possible name(s)
GNB3; PWP1; SNRNP40
Gene model
Location
KhL108 [218,518 / 232,003]
Amino acid sequence
Length: 667
>KH.L108.18.v1.B.nonSL5-1
KLCLTCHHRYHSQQLFISYYYVTMDIDDDEIKGSSQIFCMTWVPKKAAKKVPDRILLSTD
ELKSVLNVKNQNEEDSESSDDEDVIDDDVTDDDVTNDDVRNDDVTNDDVTNNDITDDDDL
KEFDMDNYDDENDTLQDGGISSLVVFPTNEDDPYITKNINEDSEDEKEEMEALNICDDDN
LLINARCEADYNSLEIHVYNKKTQDFYVHHDVPLSGAPLCMEWLDFDPGNLEDEKTNDKG
NFVAVGNINSLIEVWDLDVLNTLEPAFVLGVPQEHHRKLLRSGESNFGHTDAVLDISWNS
KSRNKLLSASADHMVALWNLEVGKVEKFFTSHKEKVQCLSWKPDSTNYLVSGAFDGRVVI
NDVRGQGSSKWKFKGEIERVVWNVTDPSYFAASTDSGMVYYCDVRVPKSLFHWRAHEKAI
PSMLMTSSALTSSLLYTASSDGRLKMWDLKGNIPKLIYERNMKMGMVHCMERNPDVLTTF
GLGGEKGGIRLWSPSSVFELSEHFPNAENVVATSDAPMAEDDLVMLNSAPDVLDVAGIGK
STEVDVRVTRMPRLKKKILSESNLNGNQKLKIKKSLKNLSISGENLMESDNTGVVGSECA
NKKQRMVENCSQIISQTVDTNETADPTVVNDSSNVKDAQTKRVKSGSAKRRQRRKKTHTR
KTALSGN
Nucleotide sequence
Length: 2,016
>KH2012:KH.L108.18.v1.B.nonSL5-1
AAATTATGTTTAACTTGCCATCACAGATACCATAGTCAGCAATTGTTCATCTCATATTAT
TACGTCACAATGGATATTGATGATGATGAAATAAAAGGTAGCAGCCAAATATTCTGCATG
ACATGGGTCCCAAAAAAAGCCGCCAAGAAAGTTCCAGACAGAATCCTTTTATCGACTGAT
GAATTAAAAAGCGTGTTGAATGTCAAGAACCAAAATGAAGAAGATTCTGAATCCAGTGAT
GATGAAGATGTCATAGATGATGATGTCACAGATGATGATGTCACAAATGATGATGTTAGA
AATGATGATGTCACAAATGATGATGTCACAAATAATGATATCACGGATGATGATGATTTG
AAAGAGTTCGACATGGATAATTATGATGATGAAAACGACACTTTACAAGACGGTGGAATT
TCTTCATTAGTCGTCTTCCCCACCAACGAGGACGATCCTTATATTACAAAAAACATTAAC
GAAGATTCAGAAGATGAGAAAGAAGAAATGGAGGCATTAAATATTTGTGACGACGACAAC
TTACTCATCAATGCTCGTTGCGAAGCCGATTATAACTCTCTGGAGATTCATGTTTACAAC
AAGAAAACACAAGATTTCTATGTCCACCACGACGTCCCACTCTCTGGTGCTCCCTTGTGC
ATGGAATGGTTGGATTTTGATCCCGGAAATTTGGAAGACGAGAAAACAAACGATAAAGGT
AACTTTGTTGCTGTTGGAAACATCAACTCCCTTATTGAGGTTTGGGACTTAGATGTTTTA
AATACACTGGAACCTGCGTTTGTACTTGGTGTGCCGCAGGAACATCACAGAAAGTTGCTT
CGTTCGGGTGAGAGTAACTTCGGGCACACCGATGCTGTTCTGGACATTTCTTGGAACTCT
AAATCAAGAAACAAATTGTTATCTGCGTCCGCTGACCACATGGTGGCACTATGGAACCTC
GAAGTTGGGAAAGTGGAAAAGTTTTTCACGAGTCATAAAGAAAAGGTGCAATGTTTGAGT
TGGAAGCCTGACTCGACGAATTACCTCGTATCCGGCGCATTTGATGGGCGTGTCGTAATC
AATGACGTCAGAGGTCAAGGGTCATCCAAGTGGAAGTTCAAAGGTGAAATTGAACGAGTG
GTTTGGAACGTCACCGATCCTTCATATTTTGCGGCAAGCACTGATTCCGGAATGGTATAC
TATTGTGACGTCAGAGTACCGAAGTCTTTGTTTCACTGGCGAGCTCACGAGAAAGCGATA
CCCTCGATGCTCATGACATCATCAGCGCTGACGTCATCACTCCTTTATACAGCGTCGAGT
GATGGAAGATTGAAAATGTGGGATTTGAAAGGAAATATACCGAAGTTGATATATGAAAGG
AATATGAAAATGGGTATGGTCCATTGTATGGAGAGAAACCCTGATGTTCTAACTACATTT
GGACTTGGTGGGGAAAAAGGAGGGATACGATTATGGAGTCCTAGCAGTGTTTTTGAATTA
AGCGAGCACTTCCCAAACGCTGAGAATGTTGTTGCAACATCCGATGCTCCGATGGCAGAA
GATGATCTTGTGATGTTGAACTCTGCTCCTGATGTCCTGGATGTTGCTGGGATCGGGAAG
AGCACGGAAGTGGATGTTAGGGTCACAAGGATGCCAAGATTAAAGAAGAAGATTTTATCA
GAATCGAATTTAAACGGAAATCAAAAACTGAAAATCAAAAAATCTTTGAAAAATCTTTCA
ATTTCTGGGGAAAATTTAATGGAATCGGACAATACGGGTGTTGTGGGTTCTGAATGCGCA
AATAAGAAGCAAAGAATGGTCGAAAACTGTTCCCAGATTATATCACAAACTGTAGATACG
AATGAAACAGCTGACCCTACGGTTGTGAATGATAGTTCTAACGTTAAAGACGCTCAAACT
AAAAGAGTTAAATCCGGTAGTGCGAAAAGGCGGCAGCGGCGAAAGAAAACGCATACACGT
AAAACGGCATTAAGTGGAAATTAATAAATTTTATCC
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[34-508] 3.9E-39 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[196-493] 1.39E-39 |
| SMART |
WD40_repeat (IPR001680) - T[199-256] 97.0 - T[276-319] 6.2E-5 - T[322-362] 2.7E-4 - T[364-403] 85.0 - T[406-448] 0.23 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[286-328] 11.277 - T[329-364] 9.305 - T[413-450] 9.706 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[286-502] 21.146 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[306-320] . - T[435-449] . |
| Pfam |
WD40_repeat (IPR001680) - T[327-360] 0.16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PWP1_HUMAN | 38.9 % | 317 | 1.08E-100 |