- Transcript 'Cisavi.CG.ENS81.R14....' >
- Transcript 'Cisavi.CG.ENS81.R44....' >
- Transcript 'KH2012:KH.L108.18.v2...' >
- Transcript 'KH2012:KH.C8.724.v2....' >
- Transcript 'KH2012:KH.L108.18.v1...'
Transcript Model
Transcript Id
KH2012:KH.L108.18.v1.B.nonSL3-1
Possible name(s)
GNB3; PWP1; SNRNP40
Gene model
Location
KhL108 [218,525 / 232,003]
Amino acid sequence
Length: 664
>KH.L108.18.v1.B.nonSL3-1
LTCHHRYHSQQLFISYYYVTMDIDDDEIKGSSQIFCMTWVPKKAAKKVPDRILLSTDELK
SVLNVKNQNEEDSESSDDEDVIDDDVTDDDVTNDDVRNDDVTNDDVTNNDITDDDDLKEF
DMDNYDDENDTLQDGGISSLVVFPTNEDDPYITKNINEDSEDEKEEMEALNICDDDNLLI
NARCEADYNSLEIHVYNKKTQDFYVHHDVPLSGAPLCMEWLDFDPGNLEDEKTNDKGNFV
AVGNINSLIEVWDLDVLNTLEPAFVLGVPQEHHRKLLRSGESNFGHTDAVLDISWNSKSR
NKLLSASADHMVALWNLEVGKVEKFFTSHKEKVQCLSWKPDSTNYLVSGAFDGRVVINDV
RGQGSSKWKFKGEIERVVWNVTDPSYFAASTDSGMVYYCDVRVPKSLFHWRAHEKAIPSM
LMTSSALTSSLLYTASSDGRLKMWDLKGNIPKLIYERNMKMGMVHCMERNPDVLTTFGLG
GEKGGIRLWSPSSVFELSEHFPNAENVVATSDAPMAEDDLVMLNSAPDVLDVAGIGKSTE
VDVRVTRMPRLKKKILSESNLNGNQKLKIKKSLKNLSISGENLMESDNTGVVGSECANKK
QRMVENCSQIISQTVDTNETADPTVVNDSSNVKDAQTKRVKSGSAKRRQRRKKTHTRKTA
LSGN
Nucleotide sequence
Length: 2,009
>KH2012:KH.L108.18.v1.B.nonSL3-1
GTTTAACTTGCCATCACAGATACCATAGTCAGCAATTGTTCATCTCATATTATTACGTCA
CAATGGATATTGATGATGATGAAATAAAAGGTAGCAGCCAAATATTCTGCATGACATGGG
TCCCAAAAAAAGCCGCCAAGAAAGTTCCAGACAGAATCCTTTTATCGACTGATGAATTAA
AAAGCGTGTTGAATGTCAAGAACCAAAATGAAGAAGATTCTGAATCCAGTGATGATGAAG
ATGTCATAGATGATGATGTCACAGATGATGATGTCACAAATGATGATGTTAGAAATGATG
ATGTCACAAATGATGATGTCACAAATAATGATATCACGGATGATGATGATTTGAAAGAGT
TCGACATGGATAATTATGATGATGAAAACGACACTTTACAAGACGGTGGAATTTCTTCAT
TAGTCGTCTTCCCCACCAACGAGGACGATCCTTATATTACAAAAAACATTAACGAAGATT
CAGAAGATGAGAAAGAAGAAATGGAGGCATTAAATATTTGTGACGACGACAACTTACTCA
TCAATGCTCGTTGCGAAGCCGATTATAACTCTCTGGAGATTCATGTTTACAACAAGAAAA
CACAAGATTTCTATGTCCACCACGACGTCCCACTCTCTGGTGCTCCCTTGTGCATGGAAT
GGTTGGATTTTGATCCCGGAAATTTGGAAGACGAGAAAACAAACGATAAAGGTAACTTTG
TTGCTGTTGGAAACATCAACTCCCTTATTGAGGTTTGGGACTTAGATGTTTTAAATACAC
TGGAACCTGCGTTTGTACTTGGTGTGCCGCAGGAACATCACAGAAAGTTGCTTCGTTCGG
GTGAGAGTAACTTCGGGCACACCGATGCTGTTCTGGACATTTCTTGGAACTCTAAATCAA
GAAACAAATTGTTATCTGCGTCCGCTGACCACATGGTGGCACTATGGAACCTCGAAGTTG
GGAAAGTGGAAAAGTTTTTCACGAGTCATAAAGAAAAGGTGCAATGTTTGAGTTGGAAGC
CTGACTCGACGAATTACCTCGTATCCGGCGCATTTGATGGGCGTGTCGTAATCAATGACG
TCAGAGGTCAAGGGTCATCCAAGTGGAAGTTCAAAGGTGAAATTGAACGAGTGGTTTGGA
ACGTCACCGATCCTTCATATTTTGCGGCAAGCACTGATTCCGGAATGGTATACTATTGTG
ACGTCAGAGTACCGAAGTCTTTGTTTCACTGGCGAGCTCACGAGAAAGCGATACCCTCGA
TGCTCATGACATCATCAGCGCTGACGTCATCACTCCTTTATACAGCGTCGAGTGATGGAA
GATTGAAAATGTGGGATTTGAAAGGAAATATACCGAAGTTGATATATGAAAGGAATATGA
AAATGGGTATGGTCCATTGTATGGAGAGAAACCCTGATGTTCTAACTACATTTGGACTTG
GTGGGGAAAAAGGAGGGATACGATTATGGAGTCCTAGCAGTGTTTTTGAATTAAGCGAGC
ACTTCCCAAACGCTGAGAATGTTGTTGCAACATCCGATGCTCCGATGGCAGAAGATGATC
TTGTGATGTTGAACTCTGCTCCTGATGTCCTGGATGTTGCTGGGATCGGGAAGAGCACGG
AAGTGGATGTTAGGGTCACAAGGATGCCAAGATTAAAGAAGAAGATTTTATCAGAATCGA
ATTTAAACGGAAATCAAAAACTGAAAATCAAAAAATCTTTGAAAAATCTTTCAATTTCTG
GGGAAAATTTAATGGAATCGGACAATACGGGTGTTGTGGGTTCTGAATGCGCAAATAAGA
AGCAAAGAATGGTCGAAAACTGTTCCCAGATTATATCACAAACTGTAGATACGAATGAAA
CAGCTGACCCTACGGTTGTGAATGATAGTTCTAACGTTAAAGACGCTCAAACTAAAAGAG
TTAAATCCGGTAGTGCGAAAAGGCGGCAGCGGCGAAAGAAAACGCATACACGTAAAACGG
CATTAAGTGGAAATTAATAAATTTTATCC
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[31-505] 3.1E-39 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[193-490] 1.42E-39 |
| SMART |
WD40_repeat (IPR001680) - T[196-253] 97.0 - T[273-316] 6.2E-5 - T[319-359] 2.7E-4 - T[361-400] 85.0 - T[403-445] 0.23 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[283-325] 11.277 - T[326-361] 9.305 - T[410-447] 9.706 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[283-499] 21.146 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[303-317] . - T[432-446] . |
| Pfam |
WD40_repeat (IPR001680) - T[324-357] 0.16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PWP1_HUMAN | 38.9 % | 317 | 8.43E-101 |