- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.L108.18.v1...'
Transcript Model
Transcript Id
KH2012:KH.L108.18.v1.B.ND2-1
Possible name(s)
GNB3; PWP1; SNRNP40
Gene model
Location
KhL108 [218,498 / 232,003]
Amino acid sequence
Length: 673
>KH.L108.18.v1.B.ND2-1
RVFCFLKLCLTCHHRYHSQQLFISYYYVTMDIDDDEIKGSSQIFCMTWVPKKAAKKVPDR
ILLSTDELKSVLNVKNQNEEDSESSDDEDVIDDDVTDDDVTNDDVRNDDVTNDDVTNNDI
TDDDDLKEFDMDNYDDENDTLQDGGISSLVVFPTNEDDPYITKNINEDSEDEKEEMEALN
ICDDDNLLINARCEADYNSLEIHVYNKKTQDFYVHHDVPLSGAPLCMEWLDFDPGNLEDE
KTNDKGNFVAVGNINSLIEVWDLDVLNTLEPAFVLGVPQEHHRKLLRSGESNFGHTDAVL
DISWNSKSRNKLLSASADHMVALWNLEVGKVEKFFTSHKEKVQCLSWKPDSTNYLVSGAF
DGRVVINDVRGQGSSKWKFKGEIERVVWNVTDPSYFAASTDSGMVYYCDVRVPKSLFHWR
AHEKAIPSMLMTSSALTSSLLYTASSDGRLKMWDLKGNIPKLIYERNMKMGMVHCMERNP
DVLTTFGLGGEKGGIRLWSPSSVFELSEHFPNAENVVATSDAPMAEDDLVMLNSAPDVLD
VAGIGKSTEVDVRVTRMPRLKKKILSESNLNGNQKLKIKKSLKNLSISGENLMESDNTGV
VGSECANKKQRMVENCSQIISQTVDTNETADPTVVNDSSNVKDAQTKRVKSGSAKRRQRR
KKTHTRKTALSGN
Nucleotide sequence
Length: 2,036
>KH2012:KH.L108.18.v1.B.ND2-1
CACGTGTGTTTTGTTTTTTAAAATTATGTTTAACTTGCCATCACAGATACCATAGTCAGC
AATTGTTCATCTCATATTATTACGTCACAATGGATATTGATGATGATGAAATAAAAGGTA
GCAGCCAAATATTCTGCATGACATGGGTCCCAAAAAAAGCCGCCAAGAAAGTTCCAGACA
GAATCCTTTTATCGACTGATGAATTAAAAAGCGTGTTGAATGTCAAGAACCAAAATGAAG
AAGATTCTGAATCCAGTGATGATGAAGATGTCATAGATGATGATGTCACAGATGATGATG
TCACAAATGATGATGTTAGAAATGATGATGTCACAAATGATGATGTCACAAATAATGATA
TCACGGATGATGATGATTTGAAAGAGTTCGACATGGATAATTATGATGATGAAAACGACA
CTTTACAAGACGGTGGAATTTCTTCATTAGTCGTCTTCCCCACCAACGAGGACGATCCTT
ATATTACAAAAAACATTAACGAAGATTCAGAAGATGAGAAAGAAGAAATGGAGGCATTAA
ATATTTGTGACGACGACAACTTACTCATCAATGCTCGTTGCGAAGCCGATTATAACTCTC
TGGAGATTCATGTTTACAACAAGAAAACACAAGATTTCTATGTCCACCACGACGTCCCAC
TCTCTGGTGCTCCCTTGTGCATGGAATGGTTGGATTTTGATCCCGGAAATTTGGAAGACG
AGAAAACAAACGATAAAGGTAACTTTGTTGCTGTTGGAAACATCAACTCCCTTATTGAGG
TTTGGGACTTAGATGTTTTAAATACACTGGAACCTGCGTTTGTACTTGGTGTGCCGCAGG
AACATCACAGAAAGTTGCTTCGTTCGGGTGAGAGTAACTTCGGGCACACCGATGCTGTTC
TGGACATTTCTTGGAACTCTAAATCAAGAAACAAATTGTTATCTGCGTCCGCTGACCACA
TGGTGGCACTATGGAACCTCGAAGTTGGGAAAGTGGAAAAGTTTTTCACGAGTCATAAAG
AAAAGGTGCAATGTTTGAGTTGGAAGCCTGACTCGACGAATTACCTCGTATCCGGCGCAT
TTGATGGGCGTGTCGTAATCAATGACGTCAGAGGTCAAGGGTCATCCAAGTGGAAGTTCA
AAGGTGAAATTGAACGAGTGGTTTGGAACGTCACCGATCCTTCATATTTTGCGGCAAGCA
CTGATTCCGGAATGGTATACTATTGTGACGTCAGAGTACCGAAGTCTTTGTTTCACTGGC
GAGCTCACGAGAAAGCGATACCCTCGATGCTCATGACATCATCAGCGCTGACGTCATCAC
TCCTTTATACAGCGTCGAGTGATGGAAGATTGAAAATGTGGGATTTGAAAGGAAATATAC
CGAAGTTGATATATGAAAGGAATATGAAAATGGGTATGGTCCATTGTATGGAGAGAAACC
CTGATGTTCTAACTACATTTGGACTTGGTGGGGAAAAAGGAGGGATACGATTATGGAGTC
CTAGCAGTGTTTTTGAATTAAGCGAGCACTTCCCAAACGCTGAGAATGTTGTTGCAACAT
CCGATGCTCCGATGGCAGAAGATGATCTTGTGATGTTGAACTCTGCTCCTGATGTCCTGG
ATGTTGCTGGGATCGGGAAGAGCACGGAAGTGGATGTTAGGGTCACAAGGATGCCAAGAT
TAAAGAAGAAGATTTTATCAGAATCGAATTTAAACGGAAATCAAAAACTGAAAATCAAAA
AATCTTTGAAAAATCTTTCAATTTCTGGGGAAAATTTAATGGAATCGGACAATACGGGTG
TTGTGGGTTCTGAATGCGCAAATAAGAAGCAAAGAATGGTCGAAAACTGTTCCCAGATTA
TATCACAAACTGTAGATACGAATGAAACAGCTGACCCTACGGTTGTGAATGATAGTTCTA
ACGTTAAAGACGCTCAAACTAAAAGAGTTAAATCCGGTAGTGCGAAAAGGCGGCAGCGGC
GAAAGAAAACGCATACACGTAAAACGGCATTAAGTGGAAATTAATAAATTTTATCC
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[40-514] 3.3E-39 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[202-499] 9.47E-40 |
| SMART |
WD40_repeat (IPR001680) - T[205-262] 97.0 - T[282-325] 6.2E-5 - T[328-368] 2.7E-4 - T[370-409] 85.0 - T[412-454] 0.23 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[292-508] 21.146 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[292-334] 11.277 - T[335-370] 9.305 - T[419-456] 9.706 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[312-326] . - T[441-455] . |
| Pfam |
WD40_repeat (IPR001680) - T[333-366] 0.16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PWP1_HUMAN | 38.9 % | 316 | 2.09E-100 |