- Transcript 'KH2012:KH.L107.7.v1....'
Transcript Model
Transcript Id
KH2012:KH.L107.7.v1.A.ND1-1
Possible name(s)
LHX1; LHX5
Gene model
Location
KhL107 [34,567 / 37,848]
Amino acid sequence
Length: 408
>KH.L107.7.v1.A.ND1-1
RHRGSLFKTMEGPLCSRCNHVISNKFVFQVDGKFWHGDCVVCSDCECPLSNRCYVRNEEL
FCSDDFCRRFGKKCGGCGGALYPNDLVHKVGQINSVFHVRCFVCYVCNNNLEPGKPFQAN
ERGLLCKDDYVAMTSSGDSEEEVWGESNAHVISDVTGVASEVKMTKQLIDEGEAKPGVWE
NEGGEVSKLAGFENRHPGQDDEDSLMSQQTKDSSASTAIDTSPPQQGCIAIAATKRRGPR
TTIKAKQLETLKNAFLSTPKPTRHIREKLAQDTGLSMRVIQVWFQNRRSKERRIKQLNTM
VARRQYFDHVPNIDVTNEQRFYADPHYYPQQQPNYYPTAANFNDSRISPTESETWIHRID
DNHHVYDDIMYDDVTQSQNGGFPGFAPRTAEGAICEQSGKSIVYWNAA
Nucleotide sequence
Length: 1,623
>KH2012:KH.L107.7.v1.A.ND1-1
ATGACCTCAAAACAAGTAGCAGGTGTTATTATGATGCACAATATACCACTATATGACATC
ACAACCAACCTTAATCTGACCAGACTTCTCAATGTCGTAAAATCGATGTGGACGCGATGG
AAAGAAGGCGATCATTGTGACGTCACAGAGGATCTTTATTCAAAACAATGGAAGGACCTT
TATGTAGCAGATGTAACCACGTGATCAGCAACAAGTTTGTATTTCAGGTGGACGGGAAAT
TCTGGCACGGCGATTGCGTCGTTTGTTCCGATTGTGAATGCCCATTGTCTAACCGTTGTT
ACGTCAGAAATGAAGAATTATTTTGCAGCGACGACTTTTGTCGTCGCTTCGGTAAGAAAT
GTGGGGGGTGCGGGGGTGCATTGTACCCCAACGACCTCGTGCACAAAGTCGGGCAGATAA
ACTCCGTGTTTCACGTTCGATGTTTCGTATGCTATGTTTGCAACAATAACCTTGAACCTG
GGAAGCCTTTTCAAGCTAATGAAAGAGGGCTGCTCTGTAAGGATGATTACGTAGCGATGA
CGTCATCAGGAGATTCCGAAGAAGAAGTTTGGGGAGAAAGTAATGCACACGTCATCAGTG
ACGTCACAGGGGTGGCATCGGAAGTGAAAATGACGAAACAATTGATCGACGAGGGTGAGG
CTAAACCTGGGGTGTGGGAAAATGAAGGAGGCGAAGTATCAAAGTTGGCGGGGTTTGAGA
ACCGACATCCTGGCCAAGATGATGAAGATTCCTTGATGTCGCAACAAACGAAAGATTCGA
GCGCGTCGACCGCGATTGACACGTCACCACCCCAACAAGGATGCATCGCGATTGCAGCGA
CGAAGCGTCGTGGACCGCGGACGACGATAAAAGCAAAACAATTGGAAACGCTGAAAAATG
CTTTCCTTAGCACCCCTAAACCCACACGTCATATCCGGGAGAAGTTGGCGCAAGATACAG
GCCTCTCGATGCGGGTGATTCAGGTTTGGTTCCAGAATCGTCGAAGCAAAGAAAGAAGAA
TTAAACAATTAAACACGATGGTAGCGCGACGTCAGTACTTTGATCACGTGCCCAATATTG
ACGTCACAAATGAACAAAGATTTTATGCAGATCCTCACTACTACCCACAACAACAACCCA
ACTATTACCCAACCGCCGCCAACTTCAACGACAGTAGAATCTCACCAACAGAAAGTGAAA
CCTGGATTCATAGAATAGATGACAACCATCATGTGTATGATGACATCATGTATGATGACG
TCACTCAATCTCAGAACGGGGGGTTCCCTGGGTTCGCGCCCCGAACCGCGGAAGGCGCGA
TTTGCGAACAAAGCGGAAAATCTATTGTTTACTGGAATGCAGCGTGATCAGTGACGTCAT
AATGCTCCTATTGTTTTGGTTCTTGTAAATTCCATTTTTATCGTACAGTTCCAATTGTGA
CGTCATAAATATAGATTATGTATAAAGATGATTGTGACGTAAGAAGCATCGATTGTTATC
AACAATGGGAGTTGTGAAACTTTGATATTCGGGAAAATCTTCAATTCATCAAAATCATAG
AGCAGAAAGTTGGCGCCGAGTTTCACGATTTTAATAAAAATTTACAGCGTGCGGCTTCCT
CGG
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[13-72] 13.019 - T[73-136] 9.93 |
| SMART |
Znf_LIM (IPR001781) - T[14-65] 2.5E-12 - T[73-129] 1.0E-9 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[15-49] . - T[74-111] . |
| Pfam |
Znf_LIM (IPR001781) - T[15-70] 1.2E-11 - T[74-133] 6.0E-12 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[220-295] 5.99E-20 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[234-294] 18.366 |
| SMART |
Homeobox_dom (IPR001356) - T[236-298] 1.5E-21 |
| Pfam |
Homeobox_dom (IPR001356) - T[237-293] 2.5E-19 |
| CDD |
Homeobox_dom (IPR001356) - T[237-295] 1.61311E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[269-292] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LMX1A_HUMAN | 31.449 % | 147 | 1.84E-40 |
| LHX5_HUMAN | 41.275 % | 217 | 1.32E-66 |
| LHX1_HUMAN | 40.94 % | 212 | 1.16E-64 |