Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L10.17.v2.R.ND3-1

Possible name(s)

NHLRC2; TRIM71

Gene model

KH2012:KH.L10.17

Location

KhL10 [12,046 / 13,779]

Sequences

Amino acid sequence

Length: 400

>KH.L10.17.v2.R.ND3-1
FNYPWGIVYDKVKHSVYVADCGCPDTPHGNDRVRRVDLVTDVSTTSAGSSQGFANGVGLK
AQFFHIAGMALDHKRQKMYIADSGNNAIRLMDLGTNEVTTFAGTNGDKAFKDGSLLTAGL
NNPQQLEYDDTNDRLFIADTDNHAIRIINVDSATPKVTTLTGGPRMEGFKDGSFAEAMWR
HPTGMAYDVRKDVLYVSDHYNHAVRMLDLKKKTVTTIAGGGEPGDVNQRIFGHGLAMNYP
EGIAIDPEHEVLYVAEFGNNCIRMISLIDYSLTVLAGSESYGSRDAVGTDAQFFHPTGLD
LDAERKMLYVTDQYNHRVRAITALGNTEVAQNSAMLIQHLGKVDAYRDLLVHNRSSVFAS
TTIIALCLFMILLWLTSRYWRGFAGRHWDKYWKMKNAHKL

Nucleotide sequence

Length: 1,325

>KH2012:KH.L10.17.v2.R.ND3-1
ATTCAACTATCCTTGGGGGATTGTATACGACAAAGTGAAGCATTCTGTCTACGTGGCAGA
TTGTGGTTGTCCTGACACTCCGCATGGCAATGATAGAGTACGAAGAGTTGATCTTGTAAC
TGACGTTTCTACGACTTCCGCTGGTTCAAGCCAAGGATTCGCAAATGGTGTCGGATTAAA
AGCCCAATTCTTTCATATTGCCGGCATGGCGCTTGACCATAAACGACAGAAAATGTACAT
TGCTGATAGTGGTAACAACGCTATCCGTCTTATGGACCTGGGTACAAATGAAGTAACTAC
ATTTGCCGGAACCAATGGTGACAAAGCTTTTAAGGACGGTTCACTTTTAACTGCAGGATT
GAACAACCCACAGCAATTGGAATATGATGACACGAACGACCGCCTCTTTATTGCTGATAC
AGATAACCACGCTATTCGAATTATAAATGTAGATTCAGCCACCCCAAAAGTCACAACGCT
GACTGGCGGACCTAGAATGGAAGGTTTTAAAGATGGCAGCTTTGCCGAAGCTATGTGGCG
CCACCCAACGGGCATGGCATACGACGTCAGAAAAGATGTGTTATATGTTTCTGATCACTA
CAATCACGCAGTACGCATGTTGGACTTGAAAAAGAAAACAGTTACCACCATTGCAGGTGG
GGGAGAACCTGGGGACGTTAACCAGAGGATATTTGGTCACGGTCTTGCAATGAACTACCC
TGAAGGTATTGCTATTGACCCAGAGCATGAGGTGCTTTATGTGGCGGAGTTTGGAAACAA
CTGCATCCGTATGATTTCTCTTATCGACTATAGCTTGACTGTGCTAGCTGGTAGTGAGAG
CTATGGGTCAAGGGATGCCGTCGGCACTGATGCTCAATTCTTTCACCCTACTGGTCTCGA
CCTTGACGCGGAAAGGAAAATGTTGTACGTGACCGATCAGTATAACCACAGAGTGCGTGC
AATCACTGCGCTGGGTAATACAGAGGTTGCACAGAACTCCGCTATGTTGATCCAGCATCT
CGGTAAAGTGGATGCATACCGAGATTTACTGGTGCATAACCGGTCGTCCGTGTTTGCAAG
TACGACCATTATCGCTCTCTGCTTGTTCATGATCTTATTGTGGCTCACAAGCCGCTACTG
GAGAGGATTTGCAGGACGACACTGGGACAAATACTGGAAAATGAAAAATGCGCATAAACT
TTAACTGCGTTAATTTTTTAAACGGCTATTTGTGTTTGTCGTTGCACGTAAGGTCACAGA
GATTGTCTTTGTTTAGAAAAAAAAGTGAAAATAAAACGAATTTAAGAGTAGTGCCAAATA
AAAAA

InterProScan

Gene3D	6-blade_b-propeller_TolB-like (IPR011042) - T[2-148] 6.7E-31 - T[149-267] 7.9E-26 - T[268-323] 2.5E-11
SMART	LDLR_classB_rpt (IPR000033) - T[56-98] 2.1 - T[113-155] 74.0 - T[172-214] 19.0 - T[228-272] 160.0 - T[286-328] 15.0

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NHLC2_HUMAN	29.18 %	97.4	7.88E-22