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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C11.102.v2...' > 
  2. Transcript 'KH2012:KH.L10.17.v1....'

Transcript Model

Transcript Id

KH2012:KH.L10.17.v1.A.SL9-1

Possible name(s)

NHLRC2; TRIM71

Gene model

KH2012:KH.L10.17

Location

KhL10 [12,046 / 14,371]

Sequences

Amino acid sequence

Length: 454

>KH.L10.17.v1.A.SL9-1
MICYLVVGLCLFHHASCMEGIVKTLAGGGYPHVGAVDTCVDGPNSVDGALADTRFNYPWG
IVYDKVKHSVYVADCGCPDTPHGNDRVRRVDLVTDVSTTSAGSSQGFANGVGLKAQFFHI
AGMALDHKRQKMYIADSGNNAIRLMDLGTNEVTTFAGTNGDKAFKDGSLLTAGLNNPQQL
EYDDTNDRLFIADTDNHAIRIINVDSATPKVTTLTGGPRMEGFKDGSFAEAMWRHPTGMA
YDVRKDVLYVSDHYNHAVRMLDLKKKTVTTIAGGGEPGDVNQRIFGHGLAMNYPEGIAID
PEHEVLYVAEFGNNCIRMISLIDYSLTVLAGSESYGSRDAVGTDAQFFHPTGLDLDAERK
MLYVTDQYNHRVRAITALGNTEVAQNSAMLIQHLGKVDAYRDLLVHNRSSVFASTTIIAL
CLFMILLWLTSRYWRGFAGRHWDKYWKMKNAHKL

Nucleotide sequence

Length: 1,487

>KH2012:KH.L10.17.v1.A.SL9-1
GATGATTTGCTACCTCGTGGTTGGTTTGTGTCTATTCCATCATGCCTCTTGTATGGAGGG
GATCGTCAAGACTTTAGCGGGGGGTGGGTACCCTCATGTTGGGGCAGTGGACACATGTGT
TGATGGGCCAAACTCCGTGGACGGTGCGTTAGCAGACACAAGATTCAACTATCCTTGGGG
GATTGTATACGACAAAGTGAAGCATTCTGTCTACGTGGCAGATTGTGGTTGTCCTGACAC
TCCGCATGGCAATGATAGAGTACGAAGAGTTGATCTTGTAACTGACGTTTCTACGACTTC
CGCTGGTTCAAGCCAAGGATTCGCAAATGGTGTCGGATTAAAAGCCCAATTCTTTCATAT
TGCCGGCATGGCGCTTGACCATAAACGACAGAAAATGTACATTGCTGATAGTGGTAACAA
CGCTATCCGTCTTATGGACCTGGGTACAAATGAAGTAACTACATTTGCCGGAACCAATGG
TGACAAAGCTTTTAAGGACGGTTCACTTTTAACTGCAGGATTGAACAACCCACAGCAATT
GGAATATGATGACACGAACGACCGCCTCTTTATTGCTGATACAGATAACCACGCTATTCG
AATTATAAATGTAGATTCAGCCACCCCAAAAGTCACAACGCTGACTGGCGGACCTAGAAT
GGAAGGTTTTAAAGATGGCAGCTTTGCCGAAGCTATGTGGCGCCACCCAACGGGCATGGC
ATACGACGTCAGAAAAGATGTGTTATATGTTTCTGATCACTACAATCACGCAGTACGCAT
GTTGGACTTGAAAAAGAAAACAGTTACCACCATTGCAGGTGGGGGAGAACCTGGGGACGT
TAACCAGAGGATATTTGGTCACGGTCTTGCAATGAACTACCCTGAAGGTATTGCTATTGA
CCCAGAGCATGAGGTGCTTTATGTGGCGGAGTTTGGAAACAACTGCATCCGTATGATTTC
TCTTATCGACTATAGCTTGACTGTGCTAGCTGGTAGTGAGAGCTATGGGTCAAGGGATGC
CGTCGGCACTGATGCTCAATTCTTTCACCCTACTGGTCTCGACCTTGACGCGGAAAGGAA
AATGTTGTACGTGACCGATCAGTATAACCACAGAGTGCGTGCAATCACTGCGCTGGGTAA
TACAGAGGTTGCACAGAACTCCGCTATGTTGATCCAGCATCTCGGTAAAGTGGATGCATA
CCGAGATTTACTGGTGCATAACCGGTCGTCCGTGTTTGCAAGTACGACCATTATCGCTCT
CTGCTTGTTCATGATCTTATTGTGGCTCACAAGCCGCTACTGGAGAGGATTTGCAGGACG
ACACTGGGACAAATACTGGAAAATGAAAAATGCGCATAAACTTTAACTGCGTTAATTTTT
TAAACGGCTATTTGTGTTTGTCGTTGCACGTAAGGTCACAGAGATTGTCTTTGTTTAGAA
AAAAAAGTGAAAATAAAACGAATTTAAGAGTAGTGCCAAATAAAAAA

InterProScan

Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[17-77] 4.5E-8 - T[79-147] 3.2E-10 - T[148-203] 1.2E-12 - T[204-321] 9.9E-26 - T[322-377] 3.0E-11
SMART
LDLR_classB_rpt (IPR000033) - T[110-152] 2.1 - T[167-209] 74.0 - T[226-268] 19.0 - T[282-326] 160.0 - T[340-382] 15.0

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NHLC2_HUMAN 28.963 % 106 1.52E-24