Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L10.17.v1.A.SL1-1

Possible name(s)

NHLRC2; TRIM71

Gene model

KH2012:KH.L10.17

Location

KhL10 [12,046 / 14,392]

Sequences

Amino acid sequence

Length: 461

>KH.L10.17.v1.A.SL1-1
RISVNSRMICYLVVGLCLFHHASCMEGIVKTLAGGGYPHVGAVDTCVDGPNSVDGALADT
RFNYPWGIVYDKVKHSVYVADCGCPDTPHGNDRVRRVDLVTDVSTTSAGSSQGFANGVGL
KAQFFHIAGMALDHKRQKMYIADSGNNAIRLMDLGTNEVTTFAGTNGDKAFKDGSLLTAG
LNNPQQLEYDDTNDRLFIADTDNHAIRIINVDSATPKVTTLTGGPRMEGFKDGSFAEAMW
RHPTGMAYDVRKDVLYVSDHYNHAVRMLDLKKKTVTTIAGGGEPGDVNQRIFGHGLAMNY
PEGIAIDPEHEVLYVAEFGNNCIRMISLIDYSLTVLAGSESYGSRDAVGTDAQFFHPTGL
DLDAERKMLYVTDQYNHRVRAITALGNTEVAQNSAMLIQHLGKVDAYRDLLVHNRSSVFA
STTIIALCLFMILLWLTSRYWRGFAGRHWDKYWKMKNAHKL

Nucleotide sequence

Length: 1,508

>KH2012:KH.L10.17.v1.A.SL1-1
GCGCATTTCAGTAAATAGTAGGATGATTTGCTACCTCGTGGTTGGTTTGTGTCTATTCCA
TCATGCCTCTTGTATGGAGGGGATCGTCAAGACTTTAGCGGGGGGTGGGTACCCTCATGT
TGGGGCAGTGGACACATGTGTTGATGGGCCAAACTCCGTGGACGGTGCGTTAGCAGACAC
AAGATTCAACTATCCTTGGGGGATTGTATACGACAAAGTGAAGCATTCTGTCTACGTGGC
AGATTGTGGTTGTCCTGACACTCCGCATGGCAATGATAGAGTACGAAGAGTTGATCTTGT
AACTGACGTTTCTACGACTTCCGCTGGTTCAAGCCAAGGATTCGCAAATGGTGTCGGATT
AAAAGCCCAATTCTTTCATATTGCCGGCATGGCGCTTGACCATAAACGACAGAAAATGTA
CATTGCTGATAGTGGTAACAACGCTATCCGTCTTATGGACCTGGGTACAAATGAAGTAAC
TACATTTGCCGGAACCAATGGTGACAAAGCTTTTAAGGACGGTTCACTTTTAACTGCAGG
ATTGAACAACCCACAGCAATTGGAATATGATGACACGAACGACCGCCTCTTTATTGCTGA
TACAGATAACCACGCTATTCGAATTATAAATGTAGATTCAGCCACCCCAAAAGTCACAAC
GCTGACTGGCGGACCTAGAATGGAAGGTTTTAAAGATGGCAGCTTTGCCGAAGCTATGTG
GCGCCACCCAACGGGCATGGCATACGACGTCAGAAAAGATGTGTTATATGTTTCTGATCA
CTACAATCACGCAGTACGCATGTTGGACTTGAAAAAGAAAACAGTTACCACCATTGCAGG
TGGGGGAGAACCTGGGGACGTTAACCAGAGGATATTTGGTCACGGTCTTGCAATGAACTA
CCCTGAAGGTATTGCTATTGACCCAGAGCATGAGGTGCTTTATGTGGCGGAGTTTGGAAA
CAACTGCATCCGTATGATTTCTCTTATCGACTATAGCTTGACTGTGCTAGCTGGTAGTGA
GAGCTATGGGTCAAGGGATGCCGTCGGCACTGATGCTCAATTCTTTCACCCTACTGGTCT
CGACCTTGACGCGGAAAGGAAAATGTTGTACGTGACCGATCAGTATAACCACAGAGTGCG
TGCAATCACTGCGCTGGGTAATACAGAGGTTGCACAGAACTCCGCTATGTTGATCCAGCA
TCTCGGTAAAGTGGATGCATACCGAGATTTACTGGTGCATAACCGGTCGTCCGTGTTTGC
AAGTACGACCATTATCGCTCTCTGCTTGTTCATGATCTTATTGTGGCTCACAAGCCGCTA
CTGGAGAGGATTTGCAGGACGACACTGGGACAAATACTGGAAAATGAAAAATGCGCATAA
ACTTTAACTGCGTTAATTTTTTAAACGGCTATTTGTGTTTGTCGTTGCACGTAAGGTCAC
AGAGATTGTCTTTGTTTAGAAAAAAAAGTGAAAATAAAACGAATTTAAGAGTAGTGCCAA
ATAAAAAA

InterProScan

Gene3D	6-blade_b-propeller_TolB-like (IPR011042) - T[24-84] 4.6E-8 - T[86-209] 1.5E-28 - T[210-327] 1.2E-25 - T[329-384] 3.1E-11
SMART	LDLR_classB_rpt (IPR000033) - T[117-159] 2.1 - T[174-216] 74.0 - T[233-275] 19.0 - T[289-333] 160.0 - T[347-389] 15.0

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NHLC2_HUMAN	28.963 %	106	1.44E-24