Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L10.17.v1.A.nonSL8-1

Possible name(s)

NHLRC2; TRIM71

Gene model

KH2012:KH.L10.17

Location

KhL10 [12,046 / 14,398]

Sequences

Amino acid sequence

Length: 463

>KH.L10.17.v1.A.nonSL8-1
NRRISVNSRMICYLVVGLCLFHHASCMEGIVKTLAGGGYPHVGAVDTCVDGPNSVDGALA
DTRFNYPWGIVYDKVKHSVYVADCGCPDTPHGNDRVRRVDLVTDVSTTSAGSSQGFANGV
GLKAQFFHIAGMALDHKRQKMYIADSGNNAIRLMDLGTNEVTTFAGTNGDKAFKDGSLLT
AGLNNPQQLEYDDTNDRLFIADTDNHAIRIINVDSATPKVTTLTGGPRMEGFKDGSFAEA
MWRHPTGMAYDVRKDVLYVSDHYNHAVRMLDLKKKTVTTIAGGGEPGDVNQRIFGHGLAM
NYPEGIAIDPEHEVLYVAEFGNNCIRMISLIDYSLTVLAGSESYGSRDAVGTDAQFFHPT
GLDLDAERKMLYVTDQYNHRVRAITALGNTEVAQNSAMLIQHLGKVDAYRDLLVHNRSSV
FASTTIIALCLFMILLWLTSRYWRGFAGRHWDKYWKMKNAHKL

Nucleotide sequence

Length: 1,514

>KH2012:KH.L10.17.v1.A.nonSL8-1
AAACAGGCGCATTTCAGTAAATAGTAGGATGATTTGCTACCTCGTGGTTGGTTTGTGTCT
ATTCCATCATGCCTCTTGTATGGAGGGGATCGTCAAGACTTTAGCGGGGGGTGGGTACCC
TCATGTTGGGGCAGTGGACACATGTGTTGATGGGCCAAACTCCGTGGACGGTGCGTTAGC
AGACACAAGATTCAACTATCCTTGGGGGATTGTATACGACAAAGTGAAGCATTCTGTCTA
CGTGGCAGATTGTGGTTGTCCTGACACTCCGCATGGCAATGATAGAGTACGAAGAGTTGA
TCTTGTAACTGACGTTTCTACGACTTCCGCTGGTTCAAGCCAAGGATTCGCAAATGGTGT
CGGATTAAAAGCCCAATTCTTTCATATTGCCGGCATGGCGCTTGACCATAAACGACAGAA
AATGTACATTGCTGATAGTGGTAACAACGCTATCCGTCTTATGGACCTGGGTACAAATGA
AGTAACTACATTTGCCGGAACCAATGGTGACAAAGCTTTTAAGGACGGTTCACTTTTAAC
TGCAGGATTGAACAACCCACAGCAATTGGAATATGATGACACGAACGACCGCCTCTTTAT
TGCTGATACAGATAACCACGCTATTCGAATTATAAATGTAGATTCAGCCACCCCAAAAGT
CACAACGCTGACTGGCGGACCTAGAATGGAAGGTTTTAAAGATGGCAGCTTTGCCGAAGC
TATGTGGCGCCACCCAACGGGCATGGCATACGACGTCAGAAAAGATGTGTTATATGTTTC
TGATCACTACAATCACGCAGTACGCATGTTGGACTTGAAAAAGAAAACAGTTACCACCAT
TGCAGGTGGGGGAGAACCTGGGGACGTTAACCAGAGGATATTTGGTCACGGTCTTGCAAT
GAACTACCCTGAAGGTATTGCTATTGACCCAGAGCATGAGGTGCTTTATGTGGCGGAGTT
TGGAAACAACTGCATCCGTATGATTTCTCTTATCGACTATAGCTTGACTGTGCTAGCTGG
TAGTGAGAGCTATGGGTCAAGGGATGCCGTCGGCACTGATGCTCAATTCTTTCACCCTAC
TGGTCTCGACCTTGACGCGGAAAGGAAAATGTTGTACGTGACCGATCAGTATAACCACAG
AGTGCGTGCAATCACTGCGCTGGGTAATACAGAGGTTGCACAGAACTCCGCTATGTTGAT
CCAGCATCTCGGTAAAGTGGATGCATACCGAGATTTACTGGTGCATAACCGGTCGTCCGT
GTTTGCAAGTACGACCATTATCGCTCTCTGCTTGTTCATGATCTTATTGTGGCTCACAAG
CCGCTACTGGAGAGGATTTGCAGGACGACACTGGGACAAATACTGGAAAATGAAAAATGC
GCATAAACTTTAACTGCGTTAATTTTTTAAACGGCTATTTGTGTTTGTCGTTGCACGTAA
GGTCACAGAGATTGTCTTTGTTTAGAAAAAAAAGTGAAAATAAAACGAATTTAAGAGTAG
TGCCAAATAAAAAA

InterProScan

Gene3D	6-blade_b-propeller_TolB-like (IPR011042) - T[26-86] 4.6E-8 - T[88-211] 1.5E-28 - T[212-329] 1.2E-25 - T[331-386] 3.1E-11
SMART	LDLR_classB_rpt (IPR000033) - T[119-161] 2.1 - T[176-218] 74.0 - T[235-277] 19.0 - T[291-335] 160.0 - T[349-391] 15.0

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NHLC2_HUMAN	28.963 %	106	1.74E-24