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TRANSCRIPT CARD

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  1. Transcript 'Cisavi.CG.ENS81.R5.1...' > 
  2. Transcript 'KH2012:KH.L10.17.v1....'

Transcript Model

Transcript Id

KH2012:KH.L10.17.v1.A.nonSL6-1

Possible name(s)

NHLRC2; TRIM71

Gene model

KH2012:KH.L10.17

Location

KhL10 [12,046 / 14,418]

Sequences

Amino acid sequence

Length: 470

>KH.L10.17.v1.A.nonSL6-1
DLFNRLTNRRISVNSRMICYLVVGLCLFHHASCMEGIVKTLAGGGYPHVGAVDTCVDGPN
SVDGALADTRFNYPWGIVYDKVKHSVYVADCGCPDTPHGNDRVRRVDLVTDVSTTSAGSS
QGFANGVGLKAQFFHIAGMALDHKRQKMYIADSGNNAIRLMDLGTNEVTTFAGTNGDKAF
KDGSLLTAGLNNPQQLEYDDTNDRLFIADTDNHAIRIINVDSATPKVTTLTGGPRMEGFK
DGSFAEAMWRHPTGMAYDVRKDVLYVSDHYNHAVRMLDLKKKTVTTIAGGGEPGDVNQRI
FGHGLAMNYPEGIAIDPEHEVLYVAEFGNNCIRMISLIDYSLTVLAGSESYGSRDAVGTD
AQFFHPTGLDLDAERKMLYVTDQYNHRVRAITALGNTEVAQNSAMLIQHLGKVDAYRDLL
VHNRSSVFASTTIIALCLFMILLWLTSRYWRGFAGRHWDKYWKMKNAHKL

Nucleotide sequence

Length: 1,534

>KH2012:KH.L10.17.v1.A.nonSL6-1
GATTTGTTTAACCGCTTAACAAACAGGCGCATTTCAGTAAATAGTAGGATGATTTGCTAC
CTCGTGGTTGGTTTGTGTCTATTCCATCATGCCTCTTGTATGGAGGGGATCGTCAAGACT
TTAGCGGGGGGTGGGTACCCTCATGTTGGGGCAGTGGACACATGTGTTGATGGGCCAAAC
TCCGTGGACGGTGCGTTAGCAGACACAAGATTCAACTATCCTTGGGGGATTGTATACGAC
AAAGTGAAGCATTCTGTCTACGTGGCAGATTGTGGTTGTCCTGACACTCCGCATGGCAAT
GATAGAGTACGAAGAGTTGATCTTGTAACTGACGTTTCTACGACTTCCGCTGGTTCAAGC
CAAGGATTCGCAAATGGTGTCGGATTAAAAGCCCAATTCTTTCATATTGCCGGCATGGCG
CTTGACCATAAACGACAGAAAATGTACATTGCTGATAGTGGTAACAACGCTATCCGTCTT
ATGGACCTGGGTACAAATGAAGTAACTACATTTGCCGGAACCAATGGTGACAAAGCTTTT
AAGGACGGTTCACTTTTAACTGCAGGATTGAACAACCCACAGCAATTGGAATATGATGAC
ACGAACGACCGCCTCTTTATTGCTGATACAGATAACCACGCTATTCGAATTATAAATGTA
GATTCAGCCACCCCAAAAGTCACAACGCTGACTGGCGGACCTAGAATGGAAGGTTTTAAA
GATGGCAGCTTTGCCGAAGCTATGTGGCGCCACCCAACGGGCATGGCATACGACGTCAGA
AAAGATGTGTTATATGTTTCTGATCACTACAATCACGCAGTACGCATGTTGGACTTGAAA
AAGAAAACAGTTACCACCATTGCAGGTGGGGGAGAACCTGGGGACGTTAACCAGAGGATA
TTTGGTCACGGTCTTGCAATGAACTACCCTGAAGGTATTGCTATTGACCCAGAGCATGAG
GTGCTTTATGTGGCGGAGTTTGGAAACAACTGCATCCGTATGATTTCTCTTATCGACTAT
AGCTTGACTGTGCTAGCTGGTAGTGAGAGCTATGGGTCAAGGGATGCCGTCGGCACTGAT
GCTCAATTCTTTCACCCTACTGGTCTCGACCTTGACGCGGAAAGGAAAATGTTGTACGTG
ACCGATCAGTATAACCACAGAGTGCGTGCAATCACTGCGCTGGGTAATACAGAGGTTGCA
CAGAACTCCGCTATGTTGATCCAGCATCTCGGTAAAGTGGATGCATACCGAGATTTACTG
GTGCATAACCGGTCGTCCGTGTTTGCAAGTACGACCATTATCGCTCTCTGCTTGTTCATG
ATCTTATTGTGGCTCACAAGCCGCTACTGGAGAGGATTTGCAGGACGACACTGGGACAAA
TACTGGAAAATGAAAAATGCGCATAAACTTTAACTGCGTTAATTTTTTAAACGGCTATTT
GTGTTTGTCGTTGCACGTAAGGTCACAGAGATTGTCTTTGTTTAGAAAAAAAAGTGAAAA
TAAAACGAATTTAAGAGTAGTGCCAAATAAAAAA

InterProScan

Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[33-93] 4.7E-8 - T[95-218] 1.5E-28 - T[219-336] 1.2E-25 - T[338-393] 3.2E-11
SMART
LDLR_classB_rpt (IPR000033) - T[126-168] 2.1 - T[183-225] 74.0 - T[242-284] 19.0 - T[298-342] 160.0 - T[356-398] 15.0

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NHLC2_HUMAN 28.963 % 106 1.95E-24