Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L10.17.v1.A.nonSL5-1

Possible name(s)

NHLRC2; TRIM71

Gene model

KH2012:KH.L10.17

Location

KhL10 [12,046 / 14,380]

Sequences

Amino acid sequence

Length: 457

>KH.L10.17.v1.A.nonSL5-1
NSRMICYLVVGLCLFHHASCMEGIVKTLAGGGYPHVGAVDTCVDGPNSVDGALADTRFNY
PWGIVYDKVKHSVYVADCGCPDTPHGNDRVRRVDLVTDVSTTSAGSSQGFANGVGLKAQF
FHIAGMALDHKRQKMYIADSGNNAIRLMDLGTNEVTTFAGTNGDKAFKDGSLLTAGLNNP
QQLEYDDTNDRLFIADTDNHAIRIINVDSATPKVTTLTGGPRMEGFKDGSFAEAMWRHPT
GMAYDVRKDVLYVSDHYNHAVRMLDLKKKTVTTIAGGGEPGDVNQRIFGHGLAMNYPEGI
AIDPEHEVLYVAEFGNNCIRMISLIDYSLTVLAGSESYGSRDAVGTDAQFFHPTGLDLDA
ERKMLYVTDQYNHRVRAITALGNTEVAQNSAMLIQHLGKVDAYRDLLVHNRSSVFASTTI
IALCLFMILLWLTSRYWRGFAGRHWDKYWKMKNAHKL

Nucleotide sequence

Length: 1,496

>KH2012:KH.L10.17.v1.A.nonSL5-1
AAATAGTAGGATGATTTGCTACCTCGTGGTTGGTTTGTGTCTATTCCATCATGCCTCTTG
TATGGAGGGGATCGTCAAGACTTTAGCGGGGGGTGGGTACCCTCATGTTGGGGCAGTGGA
CACATGTGTTGATGGGCCAAACTCCGTGGACGGTGCGTTAGCAGACACAAGATTCAACTA
TCCTTGGGGGATTGTATACGACAAAGTGAAGCATTCTGTCTACGTGGCAGATTGTGGTTG
TCCTGACACTCCGCATGGCAATGATAGAGTACGAAGAGTTGATCTTGTAACTGACGTTTC
TACGACTTCCGCTGGTTCAAGCCAAGGATTCGCAAATGGTGTCGGATTAAAAGCCCAATT
CTTTCATATTGCCGGCATGGCGCTTGACCATAAACGACAGAAAATGTACATTGCTGATAG
TGGTAACAACGCTATCCGTCTTATGGACCTGGGTACAAATGAAGTAACTACATTTGCCGG
AACCAATGGTGACAAAGCTTTTAAGGACGGTTCACTTTTAACTGCAGGATTGAACAACCC
ACAGCAATTGGAATATGATGACACGAACGACCGCCTCTTTATTGCTGATACAGATAACCA
CGCTATTCGAATTATAAATGTAGATTCAGCCACCCCAAAAGTCACAACGCTGACTGGCGG
ACCTAGAATGGAAGGTTTTAAAGATGGCAGCTTTGCCGAAGCTATGTGGCGCCACCCAAC
GGGCATGGCATACGACGTCAGAAAAGATGTGTTATATGTTTCTGATCACTACAATCACGC
AGTACGCATGTTGGACTTGAAAAAGAAAACAGTTACCACCATTGCAGGTGGGGGAGAACC
TGGGGACGTTAACCAGAGGATATTTGGTCACGGTCTTGCAATGAACTACCCTGAAGGTAT
TGCTATTGACCCAGAGCATGAGGTGCTTTATGTGGCGGAGTTTGGAAACAACTGCATCCG
TATGATTTCTCTTATCGACTATAGCTTGACTGTGCTAGCTGGTAGTGAGAGCTATGGGTC
AAGGGATGCCGTCGGCACTGATGCTCAATTCTTTCACCCTACTGGTCTCGACCTTGACGC
GGAAAGGAAAATGTTGTACGTGACCGATCAGTATAACCACAGAGTGCGTGCAATCACTGC
GCTGGGTAATACAGAGGTTGCACAGAACTCCGCTATGTTGATCCAGCATCTCGGTAAAGT
GGATGCATACCGAGATTTACTGGTGCATAACCGGTCGTCCGTGTTTGCAAGTACGACCAT
TATCGCTCTCTGCTTGTTCATGATCTTATTGTGGCTCACAAGCCGCTACTGGAGAGGATT
TGCAGGACGACACTGGGACAAATACTGGAAAATGAAAAATGCGCATAAACTTTAACTGCG
TTAATTTTTTAAACGGCTATTTGTGTTTGTCGTTGCACGTAAGGTCACAGAGATTGTCTT
TGTTTAGAAAAAAAAGTGAAAATAAAACGAATTTAAGAGTAGTGCCAAATAAAAAA

InterProScan

Gene3D	6-blade_b-propeller_TolB-like (IPR011042) - T[20-80] 4.5E-8 - T[82-150] 3.3E-10 - T[151-206] 1.2E-12 - T[207-324] 1.0E-25 - T[325-380] 3.0E-11
SMART	LDLR_classB_rpt (IPR000033) - T[113-155] 2.1 - T[170-212] 74.0 - T[229-271] 19.0 - T[285-329] 160.0 - T[343-385] 15.0

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NHLC2_HUMAN	28.963 %	106	1.41E-24