Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L10.17.v1.A.nonSL4-1

Possible name(s)

NHLRC2; TRIM71

Gene model

KH2012:KH.L10.17

Location

KhL10 [12,046 / 14,390]

Sequences

Amino acid sequence

Length: 460

>KH.L10.17.v1.A.nonSL4-1
ISVNSRMICYLVVGLCLFHHASCMEGIVKTLAGGGYPHVGAVDTCVDGPNSVDGALADTR
FNYPWGIVYDKVKHSVYVADCGCPDTPHGNDRVRRVDLVTDVSTTSAGSSQGFANGVGLK
AQFFHIAGMALDHKRQKMYIADSGNNAIRLMDLGTNEVTTFAGTNGDKAFKDGSLLTAGL
NNPQQLEYDDTNDRLFIADTDNHAIRIINVDSATPKVTTLTGGPRMEGFKDGSFAEAMWR
HPTGMAYDVRKDVLYVSDHYNHAVRMLDLKKKTVTTIAGGGEPGDVNQRIFGHGLAMNYP
EGIAIDPEHEVLYVAEFGNNCIRMISLIDYSLTVLAGSESYGSRDAVGTDAQFFHPTGLD
LDAERKMLYVTDQYNHRVRAITALGNTEVAQNSAMLIQHLGKVDAYRDLLVHNRSSVFAS
TTIIALCLFMILLWLTSRYWRGFAGRHWDKYWKMKNAHKL

Nucleotide sequence

Length: 1,506

>KH2012:KH.L10.17.v1.A.nonSL4-1
GCATTTCAGTAAATAGTAGGATGATTTGCTACCTCGTGGTTGGTTTGTGTCTATTCCATC
ATGCCTCTTGTATGGAGGGGATCGTCAAGACTTTAGCGGGGGGTGGGTACCCTCATGTTG
GGGCAGTGGACACATGTGTTGATGGGCCAAACTCCGTGGACGGTGCGTTAGCAGACACAA
GATTCAACTATCCTTGGGGGATTGTATACGACAAAGTGAAGCATTCTGTCTACGTGGCAG
ATTGTGGTTGTCCTGACACTCCGCATGGCAATGATAGAGTACGAAGAGTTGATCTTGTAA
CTGACGTTTCTACGACTTCCGCTGGTTCAAGCCAAGGATTCGCAAATGGTGTCGGATTAA
AAGCCCAATTCTTTCATATTGCCGGCATGGCGCTTGACCATAAACGACAGAAAATGTACA
TTGCTGATAGTGGTAACAACGCTATCCGTCTTATGGACCTGGGTACAAATGAAGTAACTA
CATTTGCCGGAACCAATGGTGACAAAGCTTTTAAGGACGGTTCACTTTTAACTGCAGGAT
TGAACAACCCACAGCAATTGGAATATGATGACACGAACGACCGCCTCTTTATTGCTGATA
CAGATAACCACGCTATTCGAATTATAAATGTAGATTCAGCCACCCCAAAAGTCACAACGC
TGACTGGCGGACCTAGAATGGAAGGTTTTAAAGATGGCAGCTTTGCCGAAGCTATGTGGC
GCCACCCAACGGGCATGGCATACGACGTCAGAAAAGATGTGTTATATGTTTCTGATCACT
ACAATCACGCAGTACGCATGTTGGACTTGAAAAAGAAAACAGTTACCACCATTGCAGGTG
GGGGAGAACCTGGGGACGTTAACCAGAGGATATTTGGTCACGGTCTTGCAATGAACTACC
CTGAAGGTATTGCTATTGACCCAGAGCATGAGGTGCTTTATGTGGCGGAGTTTGGAAACA
ACTGCATCCGTATGATTTCTCTTATCGACTATAGCTTGACTGTGCTAGCTGGTAGTGAGA
GCTATGGGTCAAGGGATGCCGTCGGCACTGATGCTCAATTCTTTCACCCTACTGGTCTCG
ACCTTGACGCGGAAAGGAAAATGTTGTACGTGACCGATCAGTATAACCACAGAGTGCGTG
CAATCACTGCGCTGGGTAATACAGAGGTTGCACAGAACTCCGCTATGTTGATCCAGCATC
TCGGTAAAGTGGATGCATACCGAGATTTACTGGTGCATAACCGGTCGTCCGTGTTTGCAA
GTACGACCATTATCGCTCTCTGCTTGTTCATGATCTTATTGTGGCTCACAAGCCGCTACT
GGAGAGGATTTGCAGGACGACACTGGGACAAATACTGGAAAATGAAAAATGCGCATAAAC
TTTAACTGCGTTAATTTTTTAAACGGCTATTTGTGTTTGTCGTTGCACGTAAGGTCACAG
AGATTGTCTTTGTTTAGAAAAAAAAGTGAAAATAAAACGAATTTAAGAGTAGTGCCAAAT
AAAAAA

InterProScan

Gene3D	6-blade_b-propeller_TolB-like (IPR011042) - T[23-83] 4.6E-8 - T[85-153] 3.3E-10 - T[154-209] 1.2E-12 - T[210-327] 1.0E-25 - T[328-383] 3.1E-11
SMART	LDLR_classB_rpt (IPR000033) - T[116-158] 2.1 - T[173-215] 74.0 - T[232-274] 19.0 - T[288-332] 160.0 - T[346-388] 15.0

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NHLC2_HUMAN	28.963 %	106	1.41E-24