- Transcript 'Cisavi.CG.ENS81.R2.7...' >
- Transcript 'KH2012:KH.C13.118.v1...' >
- Clone 'AHC0AAA193YF11' >
- Transcript 'KH2012:KH.C9.881.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.881.v1.A.ND1-1
Possible name(s)
SQSTM1
Gene model
Location
KhC9 [4,673,394 / 4,676,459]
Amino acid sequence
Length: 357
>KH.C9.881.v1.A.ND1-1
FFRQRKLSKKDMAMQYKAFLYTDHPNRAKEIRRFVVDHDVASSYEYLRRKVSTVFPNLGE
DNFALQWQDNEGDIIWLNSDEELLQALGQSTEDIFKLYIKESSTSQSQEKKPDFCQYQQQ
FQGFPPWGNGGWNRRGRGGRCPQWGPPPFAQMPGFFAAGQFGPCFGPPPQQAPKPSKDDK
QSTSDDKPTSSNNQSQSQNTPNQFNGEEYLQNVGKAVSDFLHPFEIDVDIDVKTPGGKDG
SSNKPTSGAEDPSASEEGGSDGKKKETESSGSEEMEWTFVKKNKTCGKEGKPDDKPDNKP
ASTETPDDNPRLAESLTQLLAMGFNNDGGWLANLLCACDYDISRALDKMQPARGSRE
Nucleotide sequence
Length: 1,647
>KH2012:KH.C9.881.v1.A.ND1-1
TTTTTTCGACAGAGGAAATTATCAAAAAAAGACATGGCAATGCAATACAAAGCGTTCCTG
TACACTGATCATCCAAACAGAGCAAAGGAAATCAGAAGATTTGTCGTGGACCATGATGTG
GCTTCAAGTTATGAATATTTAAGACGAAAGGTTTCCACAGTTTTCCCGAACTTGGGCGAG
GACAACTTTGCCCTCCAGTGGCAAGATAATGAGGGCGACATCATCTGGTTAAATTCTGAC
GAGGAGTTGCTTCAAGCTCTCGGTCAATCTACCGAAGATATTTTCAAGCTTTATATTAAG
GAAAGCTCCACTTCTCAATCCCAGGAAAAGAAACCAGATTTCTGTCAATATCAACAGCAG
TTCCAAGGTTTTCCACCATGGGGTAATGGGGGTTGGAATAGACGGGGCAGGGGTGGACGA
TGCCCACAGTGGGGCCCACCACCCTTTGCACAGATGCCAGGTTTCTTTGCCGCTGGTCAA
TTTGGACCTTGTTTTGGTCCACCTCCACAACAAGCCCCCAAACCATCTAAGGACGACAAA
CAATCAACTTCCGATGACAAACCAACTTCATCAAACAACCAATCTCAATCCCAGAACACA
CCCAACCAATTCAATGGTGAGGAATATTTGCAGAACGTTGGGAAAGCAGTTTCCGACTTC
CTTCATCCGTTCGAGATAGATGTTGACATCGATGTAAAAACTCCGGGTGGGAAAGATGGA
TCTTCGAATAAACCAACATCCGGAGCCGAGGATCCTTCTGCATCCGAGGAAGGAGGATCG
GATGGAAAGAAGAAAGAGACGGAGTCTAGTGGAAGTGAAGAAATGGAGTGGACATTTGTA
AAAAAAAATAAAACTTGTGGAAAAGAGGGCAAACCAGACGACAAACCAGACAACAAACCA
GCTTCAACTGAAACACCGGATGATAACCCACGACTTGCTGAATCATTAACCCAACTCCTT
GCAATGGGTTTTAACAATGATGGTGGGTGGTTGGCTAACCTTCTATGTGCTTGTGATTAT
GATATAAGTCGTGCTCTCGATAAAATGCAACCAGCACGTGGCAGTAGAGAGTAGAGCATG
TTTGTTTAAATCATTTTATCTTTATGTATATATCATGTTATGTATATATATGGTGTAACA
GTTTTAAGGCTCCCTCTTTTTGAAATGATGTAACAGTTTTAGATCGTAAAATAATGTTAT
CTGGTGATGGTTTAATAAGTTTAAAGTTCTTTTTTCAAATATTATTTAACACTCAGTATT
CCATTTTAAAATCGTTTTTAACGTACAGTACTGTGGGGTAAGATGGATAGCATAAGCACA
TTATATCTCCTCTTTTCCAATCATGTTTTTATAAATTAACATCGCTCTTTTAGAGTCTTG
AAGATATGGTTAATTAATTCTATAAATATTCTTTGTTTACTACCAAATGGGAAGATCAAA
AGAATAAAAACATGGACCATCTTACCCCAACCTACTATATGAGAACAATTTTATTTTTGG
GTGTTTTAAAATGATTTTTTTTTTCAAATTTTATTGGCCTATTCTGTAATGATTTATTAT
GTACATGAACCTTGTGTTTACATTTGCTGGTGTGTGAGTGTCAATATATAATCATGTATC
AATAAAACTTCATGTTACAAGCAAAAA
| SMART |
PB1_dom (IPR000270) - T[13-102] 1.9E-7 |
| ProSiteProfiles |
PB1_dom (IPR000270) - T[13-102] 17.488 |
| Pfam |
PB1_dom (IPR000270) - T[30-98] 2.1E-10 |
| Pfam |
SQSTM_UBA (IPR033741) - T[306-350] 1.7E-13 |
| SUPERFAMILY |
UBA-like_sf (IPR009060) - T[306-352] 5.61E-13 |
| CDD |
SQSTM_UBA (IPR033741) - T[311-350] 5.61669E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SQSTM_HUMAN | 24.091 % | 95.5 | 8.72E-22 |