- Transcript 'Harore.CG.MTP2014.S2...' >
- Clone 'AHC0AAA201YG08' >
- Clone 'cien197614' >
- Transcript 'KH2012:KH.C9.68.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C9.68.v1.A.ND1-1
Possible name(s)
PAX3; PAX4; PAX6
Gene model
Location
KhC9 [5,702,341 / 5,712,433]
Amino acid sequence
Length: 497
>KH.C9.68.v1.A.ND1-1
MATYDSCRQASSMALCFNRESLPHKGHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGAR
PCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIF
AWEIRDRLLNEGICNNDNIPSVSSINRVLRNLNGDHQTGGFIETTGRDPKSGSQLGLEWS
LTCNGWLPQQTMCQEQIAAEGLMGLKGKESVVESEAKDGSSEARLQLKRKLQRNRTSFTQ
IQVEALEKEFERTHYPDVFARERLATKIDLPEARIQVWFSNRRAKWRREEKIRSQRSSAA
SDGSDVMRRTNDQQSIGQCGVYSSVTQQHAQANHQLPAYHMPPEPYTGMNGYQMTSLPQT
MKVEHFPPMHRMHEAPYLYGLSSGGPSNLTPPPHYTSYDHDRRVEEPSHNTIPTPPSSAN
QPSPDHDHHGSHMQPLDGGIYQASLSGMHVGHQHHALVGAQATDQSASSMIVPPMTALQN
PANFHTAEGYWQSGVQG
Nucleotide sequence
Length: 1,926
>KH2012:KH.C9.68.v1.A.ND1-1
ACATATACTGTTATATATAAAGGACTTTTCTGATTTAGGAAAATTTACATTTTCTGTCTC
TGGACATTTTCGGCGAAATATTTTAAATGGCGACGTACGATTCTTGTAGGCAAGCCAGCA
GCATGGCGTTGTGTTTTAATAGGGAAAGTCTTCCACATAAAGGTCATAGCGGAATGAATC
AATTAGGCGGAATGTTCGTCAACGGCCGACCCCTTCCTGACAGTATTCGTCAAAAAATCG
TCGAATTTGCACATAACGGTGCGCGCCCTTGCGACATCTCGCGGATCCTGCAAGTATCGA
ACGGATGTGTCAGTAAAATTTTAGCAAGATATTACGAAACTGGGACAATCCGTCCACGGG
CAATCGGGGGGAGCAAGCCTCGAGTCGCAACCCCGGAAGTCGTCAACAAAATCGCTTCCT
ACAAGCGGGAGTGTCCCAGTATATTTGCATGGGAGATCAGGGATCGTTTGTTAAACGAAG
GAATTTGCAACAACGATAATATCCCGAGTGTGTCTTCCATAAACCGCGTTCTTCGAAACT
TAAACGGTGACCACCAAACCGGAGGTTTCATTGAGACGACTGGTCGAGATCCAAAATCGG
GTTCGCAGTTGGGGTTAGAGTGGTCATTAACTTGTAACGGTTGGTTGCCCCAGCAAACTA
TGTGCCAGGAACAAATTGCGGCCGAAGGTCTTATGGGACTGAAAGGCAAGGAATCGGTTG
TGGAATCAGAAGCCAAAGACGGTAGTAGTGAAGCCCGCCTTCAATTGAAACGTAAACTCC
AACGAAACCGAACCTCTTTCACACAAATTCAAGTCGAAGCTCTTGAAAAAGAATTTGAAA
GGACTCACTACCCGGATGTTTTCGCACGGGAAAGGCTGGCAACAAAAATTGATTTACCCG
AAGCTCGAATACAGGTTTGGTTTTCGAACCGTCGCGCAAAATGGCGACGTGAAGAGAAAA
TACGTAGCCAGCGCAGCAGCGCCGCTAGTGACGGCTCTGACGTAATGCGTAGAACGAACG
ATCAACAAAGTATCGGCCAATGTGGTGTCTACTCCAGCGTTACACAACAGCATGCACAAG
CCAACCACCAGCTCCCAGCTTACCACATGCCACCCGAACCTTACACGGGAATGAACGGAT
ACCAGATGACGTCACTCCCTCAAACCATGAAAGTCGAGCACTTCCCACCCATGCACAGAA
TGCACGAAGCTCCATACTTATACGGGTTATCCAGTGGTGGTCCAAGCAACCTTACACCCC
CACCACACTACACATCGTATGATCATGACCGCAGAGTTGAAGAACCATCCCACAACACAA
TACCCACACCCCCTAGCTCAGCCAACCAACCATCGCCCGATCACGACCACCACGGCTCTC
ATATGCAACCGCTAGACGGCGGTATATACCAAGCATCGTTGAGTGGTATGCACGTAGGCC
ATCAACACCATGCACTAGTTGGCGCCCAAGCTACTGACCAATCAGCTTCGTCCATGATCG
TTCCTCCAATGACTGCCCTGCAGAATCCTGCCAACTTCCATACTGCCGAGGGTTATTGGC
AGTCAGGCGTCCAAGGCTAAACAACCGCAAAAGTGACGTTCGATAGTTCAGTCAGTACGC
CATGTTTGAGTTAACCTATATATTATAATTCGGGCACTTGTGTGTGGTGAATGGCCATGA
GATGATGCCCAAACTACCTCCCTAGTCAAAGTTAATTTATGAACATTTCCGTAACGCCCG
TCGTGTATTAATCTTTATATATATAAGCGCATTGAGGCGTTTATGACTTATTTACTTTTG
CTTGACTTGTTCTGCAAACAATATTATACAATGTACTATATAATGATAATTAAACGGAAC
TGTTTCTTGTACTCCGTGAATACTGATTTGTGCTCGTTGAAATAAATGTCCCATTCATGT
TTAAAA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[19-94] 4.0E-40 - T[95-157] 2.8E-33 |
| Pfam |
Paired_dom (IPR001523) - T[26-150] 2.0E-69 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[26-152] 63.309 |
| CDD |
Paired_dom (IPR001523) - T[26-152] 1.06317E-81 |
| SMART |
Paired_dom (IPR001523) - T[26-150] 5.2E-89 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[28-151] 1.11E-38 - T[223-290] 8.98E-23 |
| PRINTS |
Paired_dom (IPR001523) - T[30-45] 8.3E-41 - T[48-66] 8.3E-41 - T[68-85] 8.3E-41 - T[86-103] 8.3E-41 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[60-76] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[229-289] 19.662 |
| SMART |
Homeobox_dom (IPR001356) - T[231-293] 4.3E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[233-288] 2.7E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[233-290] 2.23431E-23 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[264-287] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX7_HUMAN | 51.685 % | 258 | 4.15E-80 |
| PAX3_HUMAN | 49.064 % | 259 | 6.17E-81 |
| PAX6_HUMAN | 69.792 % | 389 | 2.11E-132 |