Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C9.653.v1.A.nonSL3-1

Possible name(s)

TMED1; TMED5; TMED7

Gene model

KH2012:KH.C9.653

Location

KhC9 [5,151,131 / 5,152,837]

Sequences

Amino acid sequence

Length: 187

>KH.C9.653.v1.A.nonSL3-1
FYQSVKSGQSIDVEYQVIDGGELDIDFRISAPSAIAVVTEFRKNDGIHTIDPTEQGDYEV
CFDNTFSRITSKTIFFEIIIDNNEGGMDEDDEAWKKFVASDETYGDKLATLEVAGQSLDS
IKSNNAKITQYQVMLRAFEAKDRNVVERNFMRINFWSLTNIVVMLSVFALQVFMVRNMFN
DKQKVRT

Nucleotide sequence

Length: 991

>KH2012:KH.C9.653.v1.A.nonSL3-1
GTTTTTACCAGTCGGTGAAAAGTGGTCAAAGCATTGATGTTGAATACCAGGTGATTGATG
GCGGTGAATTGGATATTGATTTCCGAATATCTGCACCATCAGCAATTGCAGTCGTCACAG
AATTTAGAAAAAATGATGGAATACACACGATAGACCCGACTGAACAAGGAGATTATGAAG
TTTGTTTCGACAACACTTTCAGTCGCATCACAAGTAAAACCATCTTCTTTGAGATTATCA
TCGACAACAACGAGGGGGGAATGGATGAAGATGACGAGGCATGGAAGAAGTTTGTGGCTT
CCGATGAAACTTATGGAGACAAGCTGGCCACCCTGGAGGTAGCAGGGCAAAGTCTTGATT
CAATTAAATCCAACAACGCCAAGATCACTCAATACCAAGTCATGCTGCGTGCCTTTGAAG
CAAAGGATAGAAATGTAGTTGAAAGAAACTTCATGAGAATTAACTTCTGGTCACTCACAA
ACATTGTGGTCATGCTGTCAGTTTTCGCTCTGCAAGTGTTTATGGTCAGGAACATGTTCA
ACGACAAGCAGAAAGTGCGCACTTAGTGAAGATATGGTTGCGTAATGCATGTTCAATATA
CACCCTACATATTATATAGACTTCTTTTTATTATTGAAACCGTGAGTGTGGTACAAAAGT
GATCTTTCATCTTTATTTATATTAGTAACTGCAGTAATTAGAACTTGTCTGTACCCATAT
TTTCAATTGAAGAGAAATTGTTAAGCACTTAAATTAAGATTGAAACTGAATTAGTAATTC
AATTACACTATGCTGCAAACCAAAGTATTTTTTGTACCTGCATATTTGGTCAAATTTGTT
ACACAACTGCGATTGATTTTAAAGTATCGAGTGTTTGTAATAATACTGTTTCATTTGTTG
TAAGAATACACTTCAAGCCTTCCACATGCAAAGGGTTCGTAAATGCTTTATTATCATTTG
TACGAGAGCAAGTATTCGCAATAAACTATTA

InterProScan

ProSiteProfiles	GOLD_dom (IPR009038) - T[1-80] 18.851
PANTHER	TMP21-related (IPR015720) - T[1-186] 6.2E-59
Pfam	GOLD_dom (IPR009038) - T[1-180] 2.4E-36
SMART	GOLD_dom (IPR009038) - T[1-180] 1.2E-36
SUPERFAMILY	GOLD_dom_sf (IPR036598) - T[1-84] 8.11E-21

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TMED7_HUMAN	27.66 %	87.8	1.05E-21
TMED1_HUMAN	42.781 %	152	6.94E-47
TMED5_HUMAN	49.198 %	169	2.08E-53