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- Transcript 'KH2012:KH.C9.636.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.636.v1.A.SL1-1
Possible name(s)
PAFAH1B1; WDR5; WDR5B
Gene model
Location
KhC9 [180,755 / 184,284]
Amino acid sequence
Length: 369
>KH.C9.636.v1.A.SL1-1
AQFGSLDITMSQNGNSVETKSETKREETKTVTTEANNATTAMNTTVASKPPPKINATNIS
SKPQQQKPNYMLKFTMAGHTKAVSSVKFSPDGQWLASSSADKLIKIWGAYDGKYEKTISG
HKLGISDIAWSTDSHLLCSASDDKTLKIWDVATGKCLKTLKGHSNYVFCCNFNPQSNLIV
SGSFDESVRIWDVRTGKCLKTLPAHSDPVSSVHFNRDGALIVSSSYDGLCRIWDTASGQC
LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYTKGKCLKTYTGQSNEKYCIFAN
FSVTGGKWIVSGSEDHMIYIWNLQTKEIVQKLSGHTDVVLCSACHPTENIIASGALENDR
SIKLWKSDF
Nucleotide sequence
Length: 1,529
>KH2012:KH.C9.636.v1.A.SL1-1
CTTATAAGTTGAATGTGTTTATTAATACATTTGATTAAGAAGATATTGGAATATTTCTTT
TAAACCCTAAGCCCAGTTTGGGAGTTTGGATATAACCATGAGCCAGAATGGCAACTCAGT
CGAAACTAAGTCTGAGACAAAACGCGAAGAGACAAAAACTGTGACAACTGAAGCCAACAA
TGCAACAACAGCAATGAACACGACAGTTGCTTCAAAACCACCCCCGAAAATAAACGCAAC
AAATATTTCATCTAAACCACAACAGCAAAAGCCAAACTATATGCTTAAGTTCACAATGGC
AGGGCACACTAAAGCTGTTTCATCCGTCAAGTTTAGCCCAGATGGCCAATGGCTGGCTAG
TTCATCTGCCGACAAATTGATCAAAATATGGGGGGCTTATGATGGAAAATATGAGAAAAC
TATTTCTGGACATAAACTTGGAATCTCTGACATCGCATGGTCCACCGATTCCCATCTCCT
ATGTTCCGCATCAGACGATAAAACATTGAAAATATGGGATGTCGCAACTGGAAAGTGTTT
GAAAACATTGAAGGGCCACAGTAACTATGTGTTCTGCTGCAACTTTAACCCTCAATCAAA
TCTAATTGTGTCGGGATCGTTTGATGAAAGCGTTCGAATATGGGACGTACGGACGGGAAA
ATGCTTGAAGACGTTACCGGCTCATTCAGATCCTGTGTCTTCTGTTCACTTCAATAGAGA
CGGTGCACTTATTGTATCAAGTAGTTACGACGGGTTATGTCGTATTTGGGACACGGCATC
GGGGCAATGTTTGAAGACGCTTATCGACGACGATAACCCACCCGTGTCATTCGTCAAGTT
CTCACCAAACGGAAAATACATTCTTGCCGCTACGTTAGATAACACTTTAAAGTTGTGGGA
TTACACCAAAGGAAAATGTTTGAAGACATACACGGGGCAGAGCAACGAGAAATATTGTAT
TTTCGCAAACTTTTCCGTGACAGGGGGGAAGTGGATTGTTAGTGGTTCGGAAGATCACAT
GATATATATCTGGAATCTACAAACCAAAGAAATTGTTCAAAAACTATCCGGACATACAGA
CGTGGTCCTGTGCAGCGCTTGCCATCCGACGGAGAACATTATCGCATCGGGCGCGTTAGA
AAACGACCGAAGCATCAAGTTATGGAAAAGTGACTTCTAGCCCCACCTTGTGACAATGTG
CTATTCTCTTATATGGGTATTTCCCTTCCGCCCATCGGGGTCAAGAGGTCATGGAACGAA
ATAATTCAACTTTTTAACTTCTTCGTTGCGTACAGTCCTGCCACATGGGTGCAGTAGAGT
TCTTTTCGTTGTTATTTTTAATAAACCACTCGTCATTCATAGATATCTAATCTAGTTGTA
GTTATTTGTCTATTATGACATCATAAAGGTATGTGTTATGTACACAATAACCAGTAAAAT
GAATTAACTCTTTAGATACAATAATAATGGTTCTGTTTAATCAACATACTGGAGAAAATC
AAAAGCAAAACGACAGTTGTTAAAACATA
| PANTHER |
WDR5 (IPR037834) - T[45-368] 1.8E-202 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[55-369] 7.1E-149 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[68-366] 2.44E-100 |
| SMART |
WD40_repeat (IPR001680) - T[69-108] 1.0E-9 - T[111-150] 4.9E-10 - T[153-192] 1.0E-12 - T[195-234] 7.9E-12 - T[237-277] 1.3E-6 - T[280-322] 9.3E-4 - T[325-366] 1.6E-4 |
| Pfam |
WD40_repeat (IPR001680) - T[75-107] 4.7E-9 - T[114-150] 8.1E-8 - T[154-192] 5.4E-10 - T[196-234] 2.1E-9 - T[238-277] 2.2E-5 - T[281-322] 2.2E-4 - T[328-366] 0.0011 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[76-117] 15.989 - T[118-159] 16.39 - T[160-201] 18.195 - T[202-243] 15.922 - T[245-286] 13.817 - T[306-331] 9.64 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[76-369] 70.446 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[137-151] 1.4E-8 - T[179-193] 1.4E-8 - T[309-323] 1.4E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[137-151] . - T[179-193] . - T[221-235] . - T[309-323] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 86.728 % | 594 | 0 |
| WDR5B_HUMAN | 80.844 % | 537 | 0 |
| LIS1_HUMAN | 30.341 % | 178 | 3.67E-52 |