Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C9.362.v3.A.SL1-1

Possible name(s)

RAC1; RAC2; RAC3

Gene model

KH2012:KH.C9.362

Location

KhC9 [4,150,461 / 4,155,423]

Sequences

Amino acid sequence

Length: 230

>KH.C9.362.v3.A.SL1-1
SQKLVVNIFNCTSGIFQVDHSSASPVHTTRASAAGTGTMQAIKCVVVGDGAVGKTCLLIS
YTTNAFPGEYIPTVFDNYSANVMVDGRPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF
SLVSPASFENVRAKWYPEVAHHCPDTPVILVGTKLDLRDDQETIQKLKEKKLAPILYPQG
LQMAKEVNAVKYLECSALTQKGLKTVFDEAIRAVLCPEQKPKKKKPCELL

Nucleotide sequence

Length: 2,020

>KH2012:KH.C9.362.v3.A.SL1-1
CTCGGTGTTGCATACATTGGTGTTGTGAATCTGTTATACACCGTGAATGCTTTCTAAAGA
TTGGACATTGATCTCAAAAACTGGTTGTAAACATCTTTAACTGTACCAGCGGAATTTTTC
AAGTAGACCATTCTTCTGCTAGTCCTGTACATACTACAAGAGCTAGCGCTGCTGGGACTG
GAACAATGCAGGCGATCAAGTGTGTTGTGGTTGGAGATGGAGCTGTTGGTAAAACCTGTT
TGCTGATCAGCTACACAACCAATGCTTTCCCTGGAGAATATATTCCCACTGTGTTTGATA
ACTACTCTGCCAATGTCATGGTAGATGGCCGCCCTGTCAACTTGGGATTATGGGATACAG
CAGGGCAGGAGGATTACGACAGACTTCGGCCTCTCTCCTACCCACAAACGGACGTTTTTC
TGATCTGTTTCTCACTCGTGTCACCAGCCTCATTCGAAAACGTGCGCGCAAAGTGGTATC
CAGAAGTCGCACACCACTGTCCAGATACACCGGTCATTCTCGTGGGAACAAAACTTGATT
TACGTGACGACCAGGAAACCATCCAAAAGCTGAAAGAAAAGAAACTTGCCCCAATCCTCT
ACCCACAAGGGTTGCAGATGGCGAAAGAAGTGAACGCCGTAAAGTACCTGGAGTGCTCGG
CTCTCACCCAAAAAGGCCTGAAAACCGTTTTCGACGAGGCGATCCGCGCCGTCCTGTGCC
CTGAGCAAAAGCCGAAGAAAAAGAAGCCCTGCGAGCTTTTGTGATCGCCACTCGCGTTGC
AGATACAGCGAACTGCCATTCACTACAGACGGTAGACCGCCACCGTTTTATTCAAAATTT
TTAATAACGTAATTCGTTTTGAACTCTTCGGATCCTTATTGCGTAGCGTATTTGCTGCCT
TCACGCAGCTCGTTTCCTACTTCATGTGACATCTACCATTACAAAAAAACAACACGTCGT
ATAAATTTAACGTGCTAGCACTAATTCATTATCGCCTTCATCGTACGCACTAATTATTGA
AGCGGTAATCCATTAACGACCCAAATTTTAGGATAGGTTCCTTATCAAAATCTGGAAAAC
TCGCGTGCGTCCATGTTGCATGGTGTTTTGCGACCGCGTGCAATTACTGTTATAACTCGG
CTGCCTCTGCCGGGTTCCTAACACATGTGCATATCCAAATCACGTCGTTATTTCATTTAC
AAAAGATTCATGCGCCGTTGCGTATCATGCCTGGCCAATCCTTTATAAGTTAAAACTCTT
TTCATGTACATATCAGTATTCAATCAATTTTTTACACTTCAAATCATTCAAATTATTAAT
ACTTCGTCGCTTTAGGTCAAATAGTTAATTTGCTCCTTCGGTCCTTCAAACAACGCCAGG
TTAAGCGGCTGATTTTTCATTAGCAGTCCAGCCGCCCTTCCCTGTCGTCTTGATGTTATT
ACCCTAGATATATTGGTATTATTAACGTATCACTTAATAATTTGTCGTGTACACCAAGAG
AACGAATAAAGCTCAAACTTCTGAAAATCGTTTTAGGCGTTATTGTGCTAACTTTTGGTA
CTGTGGGGTAAGATGGGATGCCGTTGGCTTCTAAATGTTGTATTTTTCGATCGTTTTTTA
AACAATTAACAACCCTTTTTTAGAGCCGCGGGGCAAGGGCTATATAATTCTGTAAATATT
GTTTACTATCAAGTTGGACGAAAAAAGAGAATGAAATAAACATTTCCATTTTGTCCACCC
TACCAAATCAACGGCAAAATATTCGCGTGTGCAAAAATTGAATGTGCGGATGAGGTAAAA
TGGGACAGCAGTCGTCGTCAAACAGAACACCCTATAATTTTAAATTCCTTCAAAAAAAGT
TCTAACCATATTTGAATCAATAACACCCATGACCTAGTTGTTGTTTTGTATTCCTTCTAA
CGTCTCAGATGAATCAACACAATCTTACTAAATCATAGTTCGCGTTTGGCGTAATATTCC
TTGGTGACCAGTGAATTAAAAAGTCGATATTTACTTGTGA

InterProScan

ProSiteProfiles	Small_GTPase_Rho (IPR003578) - T[35-214] 28.68
TIGRFAM	Small_GTP-bd_dom (IPR005225) - T[39-194] 4.5E-38
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[42-214] 3.49E-57
Pfam	Small_GTPase (IPR001806) - T[43-215] 6.4E-54

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RAC1_HUMAN	89.062 %	361	5.61E-129
RAC2_HUMAN	86.458 %	357	2.23E-127
RAC3_HUMAN	89.888 %	346	7.37E-123