- Clone 'AHC0AAA68YF17' >
- Clone 'citb035i23' >
- Transcript 'KH2012:KH.C9.287.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.287.v1.A.ND2-2
Possible name(s)
HERC3; HERC6; RCCD1
Gene model
Location
KhC9 [4,989,034 / 4,992,490]
Amino acid sequence
Length: 345
>KH.C9.287.v1.A.ND2-2
EFACCEYRQILWKDSFTFKNLCSIDEKLLRRGLTNNLGRELTKENISSKCIQSILNFDNH
GYGILQDNGEFVLQFEPERSEIFTKRHVGSVAKDSNGFYLVADDVLLHCNNILESPIIMR
PMFSSHKVRNVSCGNCHSLLSTHNGNVFSWGIGSHGQLGHGDMETLKQPQLIDALGGVCI
KRVGAGGWHSAALADTDDLYVWGWNQSGQTGFQAPVGICTNSTEALKMENSTKDSNAIGV
VLNPTLLELEMCADSNSFVSIIDVSCGVRHTAAVTSCGTLITWGWARYGQICHSCCKPDT
DIPTDSVHCEAHLPQTVMWFKTHGLYVTGVVCGPWNTFVTTSDYG
Nucleotide sequence
Length: 1,467
>KH2012:KH.C9.287.v1.A.ND2-2
GTACTCGCATATTCAAGTTAGCCGCTTATAAGTGATAAGCATGTCATCTGGTGTAGCAAT
AGGAGTTTGCTTGCTGCGAGTACAGACAAATATTGTGGAAAGACAGTTTTACTTTTAAGA
ATCTTTGCAGCATAGATGAAAAACTATTGCGCCGTGGGCTTACTAACAATCTGGGTAGAG
AGTTGACGAAGGAAAATATATCATCCAAATGCATCCAATCGATTTTAAACTTCGATAATC
ATGGTTATGGAATACTACAGGATAATGGAGAATTTGTGCTGCAGTTCGAGCCTGAGAGAA
GTGAAATATTTACAAAACGCCATGTTGGATCTGTAGCAAAAGATTCAAATGGATTTTATT
TAGTAGCAGATGATGTGCTACTACATTGCAATAACATCTTGGAGAGTCCTATTATTATGA
GGCCAATGTTTTCAAGCCACAAAGTAAGGAATGTTTCATGTGGTAATTGTCACAGCTTAT
TATCAACACATAACGGAAACGTCTTCAGCTGGGGAATTGGCAGTCATGGACAACTTGGAC
ATGGTGATATGGAAACATTAAAGCAACCACAGTTGATAGATGCCCTTGGTGGTGTTTGTA
TTAAGCGTGTAGGGGCTGGTGGGTGGCACTCAGCTGCTCTGGCAGACACTGATGATTTGT
ATGTCTGGGGTTGGAACCAGTCAGGTCAGACTGGATTTCAAGCCCCAGTTGGTATTTGCA
CCAACTCCACTGAAGCACTTAAAATGGAAAATTCTACAAAAGATTCCAATGCCATAGGTG
TTGTTCTAAACCCAACATTGTTAGAACTTGAAATGTGTGCGGATTCAAACAGCTTTGTTT
CTATTATTGATGTATCCTGTGGTGTTAGGCACACTGCTGCAGTTACTTCGTGTGGGACTT
TAATCACATGGGGTTGGGCACGATATGGTCAAATATGTCACTCATGTTGTAAACCAGACA
CTGATATCCCAACAGACAGCGTACATTGTGAAGCGCATTTGCCACAGACTGTGATGTGGT
TTAAAACACATGGTTTATATGTAACTGGTGTAGTGTGTGGTCCATGGAATACGTTTGTAA
CCACGAGTGATTATGGTTAATCATTATGTTAATACATTGATGCGGTTTCCAGTTCTATTA
CTTTATGAATTTAAAAATCTTTGCAAGCTGGTATGTCTTATCGCACGATTTTACAAAAGA
TAGTTGCAGAACTATGCAAACCAAACTGTGTTTGATTTAATCAAGCAGTTTGATAATTTA
ACCTTATTTTATTTACATGCAAGTAAAATATTTTTGTGCCACAAGATTAAAATTCCAGTG
TCATACCAAAATTCGTATAGTGTTAAACTTAATCATGTTAGGCATTTATTAGCGTACTTC
GCACTTTAATTCATTATCGTAGCTGGTGACTTTTTAAAAAACAAAATGCATAAAAAAGTG
GAACGGAATACAACTTTGCTCTCTTTT
| SUPERFAMILY |
RCC1/BLIP-II (IPR009091) - T[75-342] 4.19E-41 |
| Gene3D |
RCC1/BLIP-II (IPR009091) - T[106-344] 4.3E-41 |
| Pfam |
Reg_chr_condens (IPR000408) - T[144-193] 1.0E-10 |
| ProSiteProfiles |
Reg_chr_condens (IPR000408) - T[145-196] 16.011 - T[197-277] 8.534 |
| PRINTS |
Reg_chr_condens (IPR000408) - T[146-162] 9.6E-7 - T[180-193] 9.6E-7 - T[199-215] 9.6E-7 |
| ProSitePatterns |
Reg_chr_condens (IPR000408) - T[183-193] . - T[264-274] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HERC4_HUMAN | 26.144 % | 86.7 | 1.45E-18 |
| HERC5_HUMAN | 29.333 % | 94 | 5.64E-21 |
| RCCD1_HUMAN | 33.956 % | 164 | 1.11E-47 |