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- Transcript 'KH2012:KH.C9.249.v2....' >
- Transcript 'KH2012:KH.C9.249.v2....'
Transcript Model
Transcript Id
KH2012:KH.C9.249.v2.A.SL2-1
Possible name(s)
CSMD1; CSMD2; CUBN
Gene model
Location
KhC9 [1,591,329 / 1,598,067]
Amino acid sequence
Length: 476
>KH.C9.249.v2.A.SL2-1
VRWDNSVVRLRDRRSNITFVSNAINLFFRTDGSVRLWGFVANYIIVNSTVGSYTTPPTTT
VAPCGFSANATNFSRPLNSPGYPRSYGNYLNCNWYLTARPGYFVQFILVRLTTERCCDRL
RVYGSFPYMRQFAGYVTRSTTVVSVNNTMRLYFRSDGSVTRSGFRGYFRETSVAMTTPAP
TTTTPPTTPVPCGGNLTATNVSQDFYTPGWSSRYRNNLRCYWYIYARPGWQVHIQVVSVD
TESCCDRLRITAPGQTYTINGRSSVIRNYISPANRFTLYFRTDSSVTRRGIYLRYQETRN
NQIPTTPTIPPTTPEPCGTNYEVLSSEQPLRSPNYPNPYLSSRVCVWILTAPQNSKIKLR
LSSFSTENCCDILDITNVLNRRVVELGGNLSSTVYYSSTNMMTLTFRTDDNNNMQGFEFF
FSIATGPIPTQRPAVAPTNGNNQQVQLATTSKARILHPVNTGLVFAVAFSIYSLLL
Nucleotide sequence
Length: 2,676
>KH2012:KH.C9.249.v2.A.SL2-1
GTTAGGTGGGATAATAGTGTGGTGCGTCTTCGTGACAGAAGATCAAACATAACGTTCGTG
AGCAATGCCATTAATCTTTTTTTCCGAACGGACGGATCTGTAAGATTGTGGGGGTTTGTT
GCAAACTACATAATTGTCAACTCCACAGTCGGCTCATACACAACCCCCCCTACCACAACC
GTCGCACCATGTGGATTCAGTGCCAACGCCACAAATTTTTCGCGACCTCTCAACTCACCT
GGCTACCCCAGGTCATACGGCAATTATCTTAACTGTAATTGGTACCTAACGGCCAGACCT
GGTTACTTTGTACAGTTCATATTGGTACGACTTACAACAGAACGTTGCTGTGACCGGCTG
AGGGTTTATGGGTCGTTCCCATACATGCGTCAATTCGCAGGCTACGTCACCAGAAGTACA
ACAGTGGTGTCTGTAAACAACACAATGCGTTTGTATTTCAGAAGTGATGGTAGTGTAACA
AGATCAGGGTTCCGGGGTTATTTTAGAGAAACTTCAGTCGCCATGACGACGCCGGCTCCA
ACCACAACAACACCACCCACAACTCCAGTTCCTTGTGGTGGCAACCTGACGGCAACCAAT
GTGTCACAAGATTTCTACACTCCTGGTTGGAGTTCAAGATACAGAAATAATCTTAGATGT
TATTGGTATATATATGCAAGGCCAGGATGGCAAGTTCACATACAAGTTGTCAGTGTTGAT
ACTGAAAGCTGCTGTGATCGTCTGCGAATTACAGCTCCTGGTCAAACCTATACTATAAAT
GGTAGAAGCTCTGTCATCCGTAACTACATCAGTCCAGCAAACAGATTCACCCTTTACTTC
AGGACAGATTCTTCTGTTACTCGAAGAGGAATTTACTTAAGATACCAAGAAACACGGAAC
AACCAGATACCTACAACACCAACAATACCCCCTACCACTCCAGAGCCTTGTGGAACAAAC
TATGAGGTTTTATCTTCTGAACAACCACTCAGATCCCCTAACTATCCAAACCCATATCTC
AGCAGCAGGGTTTGTGTGTGGATACTTACAGCTCCTCAAAACTCAAAGATCAAACTCAGA
CTTAGTTCATTTTCAACTGAAAACTGCTGTGACATCTTAGATATTACTAACGTTCTAAAC
AGAAGAGTTGTTGAATTGGGTGGCAATCTCTCAAGCACAGTTTATTATTCAAGCACGAAC
ATGATGACTTTGACCTTTAGAACTGATGATAACAATAACATGCAAGGTTTTGAATTCTTC
TTCTCAATTGCAACCGGACCAATTCCTACACAGAGACCTGCAGTTGCCCCTACCAACGGA
AACAATCAACAAGTTCAACTGGCCACCACCAGCAAAGCAAGGATTCTTCACCCAGTTAAC
ACAGGCTTAGTATTTGCTGTTGCTTTCTCAATATATTCACTATTACTATAATATCCCATC
ATTGTGTTATATCTCTACCATATAAGAGATTTAAAGTAAATTAATTTTACAAACACACAT
CAGTGTTTCTATTTTAAACTGCTGTATTAACTTATGTTAGCTTTGCCAAAACAAACCAGT
TCCATATTAATCTAAACCACATAAAAAACATCAGTTGTAATTTCTGTATAAAGAAGTGAT
AGTTTTATATTACTTTTTTTATTTCTGTATTTAGTGTATATAGTAAAAAAGCCCATTTAA
ATAACCTGATAAAATCAAAGGCACCTCAACTTATAATCAATAAATTTGGCATATATCAGT
GGGGCAAGACCGTTGTTGGCTGTTCTGTTTCATACCCGCTTACTAGTTATTCTATTTATA
CCTTTGTGGGCAATTCTTTATTAACATGTTGCTACCAATTTGGTCATTAGTGACCATTGA
ATTGGAGCAACTGTTAAATGTCCTGCCCAGGAACCCTTACCCACGATAATACCAACATTA
ACCTTTGAATTCACCTCTGGGTTAAAAGCAGACATGCCGTACACCCTGCCACGTCGTCAT
TCTATTACATAACAGAACTGCTGGGTAGTTGAGGCTTCTTCTAATTTGTGTTTGTGATAA
ACAACACAGTCTCAATTATTTTATAATTCTTTCTTTATATTATGAGAAGTTACATATATG
GGCTCTATATATACAACTGTACCAACCGGCCATTTTATTCTGTATACCATTATTATGTAT
TAAAGAAACTCTCCGTATACAGAAACATATTCTTTGTGTTGAATACAAAAACTGCATTAA
ATATACCTAATGTTCATTAAAACAAATTTGTAGCTAATTCAGCAGAAATTGACTACAGTT
CATTGCGTTCAATTACGTCATTATATTTTACGTCATCATATTTCACGTCATCTTGTTTCA
CGTCATCATGTTTTACGTCATCATGCTTCACGTCATCATGGCTGTATTCAAATGGTTCCT
CAGCCATGCCCTGCTCTACATTATACCAATCTTCCAGCGCTGTTTTGATATTTTCATCCG
TAACGCTTTCGCTTCTGACTTCATTAATCTCACTCGAACCCACAAGACGCGTGAAGATTC
TGTCTCCCATAAAAGGAGTTCCCTTTAAAACTCCCCGGTACACGTTTATCCAGGTTTCTC
TTTTTAAGTTCTTTACTTTGCCAAGTGCCCTGTGGAGTATATGTTCCACATTTGTTCGAG
GTATCAGCGTCGCCTCAAGTAAAATTGAGTTAATAG
| SUPERFAMILY |
Sperma_CUB_dom_sf (IPR035914) - T[63-169] 5.23E-21 - T[191-296] 1.18E-19 - T[316-422] 1.96E-23 |
| SMART |
CUB_dom (IPR000859) - T[64-171] 6.7E-15 - T[192-298] 2.7E-12 - T[317-424] 1.3E-20 |
| CDD |
CUB_dom (IPR000859) - T[64-169] 4.24672E-15 - T[192-296] 2.89003E-16 - T[317-423] 4.24053E-19 |
| ProSiteProfiles |
CUB_dom (IPR000859) - T[64-171] 15.256 - T[192-298] 13.533 - T[317-424] 14.183 |
| Pfam |
CUB_dom (IPR000859) - T[64-167] 1.2E-10 - T[192-295] 2.8E-10 - T[317-419] 4.0E-16 |
| Gene3D |
Sperma_CUB_dom_sf (IPR035914) - T[67-172] 6.9E-17 - T[192-301] 4.5E-14 - T[323-424] 6.0E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CUBN_HUMAN | 25.849 % | 89 | 1.75E-18 |