- Transcript 'KH2012:KH.C9.247.v2....'
Transcript Model
Transcript Id
KH2012:KH.C9.247.v2.A.SL2-1
Possible name(s)
PCDH12; PCDH18; PCDH19
Gene model
Location
KhC9 [2,284,365 / 2,293,319]
Amino acid sequence
Length: 1,177
>KH.C9.247.v2.A.SL2-1
SKMNIIVITFAVTLLSIFKFQNTNASNTVSLRVYVNEGNAPGEVVADMSEIFGLLWKDRL
DRHFKLLNQKIVSSSSFNLPTSLQQRPHAVALGASNGLMTLRRVVDREVECGQAKECIIK
VQAVMLPQRVFSLLNLDIVINDINDNLPKFPHKPIVLNVSESTALAEPVNLDAFQARDLD
SGNNSRISYSISPSKPFEVQQGVDEAGRPHLQLLLNAELDYETKSVYHLTLHATDHGKPA
LSNQVTVRIMVTDSNDHSPVFSTSSELVIELLENQEPGIIQTVHATDRDSGENGRVRYFL
GDEPQSVSHQLVTVDENSGEVTLVRNLDREVHDGMRILIEARDSPATNQRTTRMWLVLRV
DDDNDNAPVINMNFIVDADGQTAYISEASPVGTYVAYVSATDADHGKNSEVEISIKTLIN
GNFVSSGHFELAADGLIGTGLELDREVQSIYKVAVIACDAGDKIRCSRNNITVIILDEND
HTPVFKKSVYEVTLSEADGIGTSVITVSASDMDSKFAPVWTKNELEISLNGKVTYLIESS
DNTFSVDATTGEVTLVRPLDREGQSEWEVRVIARDGGNPYRESFCTLKVTVSDVNDNRPL
FIYPAVENSTAHATILRDDVIARIQAIDYDSEKFSKVELSMVSVDGCTNLQGVDGNLPYT
YFILDTKTGDLRLNMSTTDLNDVVGTHRIIVKASDNGTPPLEMNTSLIIVVSDTLLLPSQ
MYHEKEDAPSVPGLAISTNFLIIVISLASATLILLIVITAVVIKCKKDNKKIRTYNCRDA
ESENGWEEGNTDKAQTVNNSNTNTWSKSVVSHEGSSQITENERLSTQSTENNNKQAKGAR
KPSDISLNFPLHVSSGPMLMTSRQDPATYNVTSSMIRPPSLLTTFSTEGKIAQPRLHGLL
PHITSHTDGDSGRGDSDPDTGSYDVVKDIDYLPSYSYVNPDSQSKNMKAVVSNGMGSRCT
DDCNKYGHSDACWMPSPTKGQYYASADNEVSRSSCYTQPTFTQANSDIDFQREYNRVLET
IEETTPVLESTIGYEYEPEVMRQNVRRSICLSRLASESRLLSQSSEPEVYHSGVLSRQYG
LWTDEYQKPIGVRPNSLSASPAPSTGPASSHLSGNSSCPSTVFTHCDTDSKTSSNIVAPK
PHYLSMTSRASTLPCENNPNMKETQQIISDIDQLLSE
Nucleotide sequence
Length: 3,951
>KH2012:KH.C9.247.v2.A.SL2-1
TAGCAAAATGAATATAATTGTAATAACTTTTGCGGTCACGCTACTTTCTATATTCAAATT
CCAAAATACTAATGCTTCTAACACAGTATCTTTGCGGGTGTATGTTAACGAAGGAAATGC
ACCAGGGGAGGTTGTTGCAGACATGTCCGAAATATTTGGCTTACTTTGGAAAGACAGACT
CGATCGTCACTTCAAACTTCTTAATCAGAAAATAGTTTCATCGTCGTCATTTAATTTGCC
CACTTCGCTGCAGCAACGCCCTCATGCAGTTGCACTTGGTGCTTCTAATGGACTTATGAC
CCTGCGTAGAGTCGTGGACAGGGAAGTGGAATGCGGCCAAGCGAAGGAATGTATTATAAA
AGTTCAGGCCGTCATGCTTCCACAAAGAGTTTTCTCTCTTCTGAATCTTGACATTGTTAT
AAACGACATCAATGATAATTTGCCCAAATTCCCACACAAACCAATTGTACTAAATGTGAG
CGAAAGTACAGCATTGGCAGAACCTGTCAATCTAGACGCATTCCAAGCTCGTGACCTTGA
TTCAGGTAACAACTCCCGTATTTCGTATTCTATTTCGCCAAGTAAGCCGTTTGAGGTCCA
ACAAGGGGTTGATGAGGCGGGCCGACCTCATTTACAGTTGCTTCTTAACGCTGAATTAGA
TTATGAGACAAAGTCGGTTTACCATTTGACCCTTCACGCAACTGACCACGGAAAACCCGC
ATTATCCAATCAAGTTACTGTCAGAATTATGGTGACTGATTCGAACGACCACAGCCCTGT
GTTTTCCACAAGCTCTGAGTTGGTGATCGAGTTGCTGGAAAACCAAGAGCCTGGAATTAT
TCAAACTGTTCATGCGACTGATAGGGATTCTGGCGAAAACGGTCGAGTAAGATACTTTCT
TGGGGACGAACCACAATCTGTCTCCCATCAGTTGGTTACTGTAGATGAAAATTCTGGAGA
AGTTACTTTGGTCAGAAATCTTGATCGGGAAGTTCACGATGGCATGAGAATTCTGATAGA
AGCACGTGATTCCCCAGCGACCAATCAGCGCACGACTCGCATGTGGTTGGTTCTTCGTGT
TGATGATGACAATGATAATGCTCCAGTTATAAATATGAACTTTATTGTAGATGCTGACGG
CCAAACAGCATATATATCTGAAGCATCTCCTGTCGGAACATACGTGGCCTACGTTAGTGC
TACTGATGCCGACCATGGAAAAAACAGCGAAGTAGAAATTTCCATCAAGACATTAATCAA
CGGGAACTTTGTATCTTCCGGACATTTTGAACTAGCAGCTGATGGTTTGATCGGGACGGG
TCTTGAGTTAGACCGGGAAGTCCAGAGCATTTACAAAGTTGCTGTGATTGCATGCGACGC
AGGGGATAAAATAAGGTGTTCACGCAACAATATCACTGTCATTATACTTGACGAAAACGA
TCACACCCCTGTATTTAAGAAGTCAGTGTATGAAGTTACATTGTCAGAAGCTGATGGAAT
TGGAACATCTGTCATTACTGTATCTGCATCTGATATGGATAGCAAGTTTGCACCCGTGTG
GACAAAAAACGAGCTGGAAATTTCACTGAACGGGAAGGTTACTTATTTAATAGAAAGTAG
CGATAATACGTTCTCGGTGGATGCAACGACAGGAGAAGTTACGTTGGTTCGTCCACTGGA
TCGAGAAGGTCAAAGCGAATGGGAGGTAAGAGTTATTGCACGAGACGGTGGCAATCCATA
CAGGGAATCTTTTTGCACCTTAAAAGTCACAGTTTCTGACGTAAACGATAACCGACCATT
GTTCATTTACCCTGCTGTTGAAAACTCTACTGCACACGCAACAATACTTCGTGACGATGT
GATTGCCCGAATACAGGCGATTGACTACGACAGTGAGAAGTTCTCAAAAGTTGAGCTTTC
AATGGTTTCCGTGGATGGCTGTACCAACTTGCAAGGGGTCGATGGTAACTTGCCATACAC
TTACTTTATCCTTGATACAAAAACCGGTGACTTGAGGCTCAACATGAGCACAACTGATCT
CAACGACGTTGTGGGCACGCACAGAATTATTGTGAAGGCAAGCGACAATGGAACACCGCC
TCTTGAAATGAACACCAGTCTCATAATAGTGGTGTCCGACACCTTGCTGTTGCCATCTCA
AATGTACCACGAGAAAGAAGATGCTCCGTCTGTTCCTGGACTCGCGATTTCAACCAACTT
TCTGATTATCGTGATTTCGCTGGCATCCGCTACTCTTATTTTACTCATTGTTATCACAGC
AGTGGTCATCAAATGCAAAAAGGACAATAAGAAAATCCGAACATACAACTGCCGGGATGC
GGAAAGCGAGAATGGCTGGGAAGAGGGGAATACTGACAAAGCACAAACAGTGAACAACAG
CAATACCAATACTTGGTCCAAGTCTGTAGTCAGCCATGAAGGTTCATCACAAATTACAGA
GAACGAACGACTATCGACTCAATCAACTGAAAACAATAATAAGCAAGCGAAAGGGGCCAG
GAAGCCATCAGATATCAGTTTAAATTTTCCTCTTCACGTGTCTTCGGGTCCGATGTTAAT
GACGTCACGACAAGACCCTGCAACGTACAATGTGACGTCATCAATGATCAGACCACCGTC
TTTGCTCACAACGTTTTCAACTGAAGGAAAGATTGCACAGCCAAGACTGCATGGTCTTCT
ACCACACATAACATCACATACGGATGGAGACAGTGGGCGTGGTGACAGCGACCCGGATAC
TGGAAGTTACGATGTTGTAAAAGATATTGATTATCTTCCATCTTATTCTTACGTCAACCC
CGATTCTCAAAGCAAAAACATGAAAGCAGTGGTGTCTAATGGTATGGGCTCTCGGTGTAC
CGATGATTGCAACAAATACGGACACAGTGATGCATGCTGGATGCCTTCGCCAACTAAAGG
TCAATATTACGCAAGTGCAGATAACGAAGTTTCACGAAGCTCATGTTACACTCAACCCAC
GTTCACCCAAGCGAATAGTGACATCGACTTCCAACGCGAATACAACCGAGTTCTTGAAAC
CATAGAGGAAACCACTCCTGTGCTCGAGTCGACCATCGGCTATGAATATGAACCGGAGGT
TATGCGGCAAAACGTGCGCCGTTCCATCTGTCTATCTCGTCTTGCATCAGAGTCACGCTT
GCTATCACAGTCCAGTGAGCCCGAGGTCTACCACAGCGGGGTTCTAAGCAGACAGTACGG
TCTTTGGACAGACGAATACCAGAAGCCAATCGGCGTTCGACCGAATTCACTCTCAGCATC
TCCAGCGCCGTCTACCGGCCCCGCGAGTTCCCATTTATCCGGCAACTCGTCTTGTCCATC
AACTGTTTTTACACATTGCGATACGGACAGTAAGACCTCGTCTAATATTGTTGCCCCCAA
ACCCCATTACCTATCCATGACTTCCCGAGCGTCGACATTACCTTGCGAAAACAACCCCAA
CATGAAAGAAACTCAACAAATTATCAGCGACATCGACCAATTACTTTCAGAATAAAACAC
CATCAAAAATAGTTTCCTGTATTCTGTCTTTTCATTCTTTAATTTCGCTTATAACTCCAA
TATAGGTCTCCTGTCATTTTTTTGCGAACCAACGTTTCAGTGTCCTACTCCCAGGTCAGG
TTCATCGCGGCTCTATACGTATAGGTGAAGTGAAGTCCTACAGCTTCACACGGCATATGA
AGGAAGATTTAGGCCAGAGTTGGGATATTTCACCTTTTCACAATTGTTACGTTTATTTCT
TCTTTTGGAAGTGCCTGTAACGAAGATATTATTGTCTGATGCTTTTTCACGTTATTTTTG
CGCTTTCTTTCTTAACAACATACTGTGAAAAATTCTTCAGTATTTCTATAAAAAAACAAC
AAAAATATTTCAAAATTGCTGCGTATGAATCAAATAAATGCAGTATTACAG
| SMART |
Cadherin (IPR002126) - T[72-148] 2.3 - T[174-259] 1.5E-22 - T[283-368] 7.3E-19 - T[398-483] 3.2E-13 - T[520-599] 5.6E-23 - T[624-719] 0.0071 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[138-279] 1.57E-23 - T[249-375] 3.57E-20 - T[364-477] 1.02E-14 - T[473-604] 3.14E-27 - T[594-713] 4.19E-11 |
| Pfam |
Cadherin (IPR002126) - T[173-252] 2.1E-12 - T[269-355] 1.3E-12 - T[382-475] 4.3E-10 - T[490-591] 1.2E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[249-259] . - T[589-599] . |
| PRINTS |
Cadherin (IPR002126) - T[310-329] 3.2E-26 - T[376-405] 3.2E-26 - T[450-462] 3.2E-26 - T[464-483] 3.2E-26 - T[483-496] 3.2E-26 - T[549-575] 3.2E-26 - T[583-600] 3.2E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 29.6 % | 325 | 8.34E-94 |
| PCD19_HUMAN | 29.519 % | 285 | 1.09E-79 |
| PCD12_HUMAN | 29.225 % | 277 | 4.83E-77 |