- Transcript 'KH2012:KH.C9.220.v2....'
Transcript Model
Transcript Id
KH2012:KH.C9.220.v2.A.nonSL4-1
Possible name(s)
PAK1IP1; WDR5; WDR5B
Gene model
Location
KhC9 [5,133,096 / 5,135,343]
Amino acid sequence
Length: 340
>KH.C9.220.v2.A.nonSL4-1
LVIGYTVNIKKGEDEDLTLTYETSFTDHAQTGCIKCLTSGKSYVAAGSTDETICLYDLNE
GKELWILTGPVNQVIFPDKQRLISCSDDGTISVWEAQPSGNMIKSLKGMFTVHPSGKLGM
SVSPKDGTLRTWNLLTSRSVYVKNIKKESQIEFIRWSPDGKYYISASPKQLNIFELENAE
CVCECDFDIPVLTIEFLPLNQTQMNRIVVGDNGGNISLYEIPSGKKLLSYKAHENRVKCV
SPMVTPEDIILNGTWLVTASSDECVKVWDVSNSELDQEKTPNCLLTIPTGARLTCVTVWP
KTEPRLPASTESLDTSESATEKKTAKRRRKRKNSAKRNPS
Nucleotide sequence
Length: 1,076
>KH2012:KH.C9.220.v2.A.nonSL4-1
AATTAGTGATCGGATATACTGTAAACATAAAAAAAGGGGAGGACGAAGATTTGACGCTGA
CATACGAAACAAGCTTCACAGATCATGCACAAACAGGTTGCATTAAATGTTTGACATCTG
GGAAATCGTATGTTGCAGCTGGTTCCACTGACGAAACGATTTGTTTGTACGATTTAAACG
AAGGGAAAGAGCTTTGGATTCTTACAGGACCAGTTAATCAAGTTATTTTCCCGGATAAGC
AGCGTCTTATAAGTTGCAGTGATGATGGAACAATATCTGTTTGGGAGGCTCAACCATCAG
GAAACATGATAAAGTCATTAAAAGGCATGTTTACTGTTCACCCATCCGGGAAACTTGGGA
TGTCAGTTTCGCCCAAAGATGGGACACTAAGGACATGGAATTTACTCACAAGCAGATCTG
TGTATGTTAAAAATATAAAGAAAGAAAGCCAAATTGAATTTATAAGGTGGTCTCCGGATG
GAAAATATTACATTTCTGCTTCTCCTAAACAGCTGAATATATTTGAACTTGAGAATGCCG
AATGTGTGTGTGAATGTGACTTTGATATCCCAGTTCTTACCATTGAGTTTCTACCACTTA
ATCAAACTCAAATGAATCGAATTGTGGTGGGCGATAATGGTGGAAATATATCACTTTACG
AAATACCATCTGGAAAAAAGCTTTTAAGCTACAAGGCACATGAGAACAGAGTCAAATGCG
TTAGCCCAATGGTCACCCCAGAAGACATTATACTTAATGGAACATGGCTAGTGACAGCTT
CTTCCGATGAATGTGTTAAAGTATGGGATGTTTCAAACTCTGAACTTGATCAAGAAAAAA
CACCAAACTGCTTGCTGACCATACCCACAGGAGCTAGACTGACCTGCGTTACAGTGTGGC
CGAAAACTGAACCAAGACTTCCTGCGTCAACTGAAAGTTTAGACACAAGTGAATCAGCTA
CAGAAAAGAAAACAGCAAAAAGAAGAAGAAAGCGAAAAAATTCGGCAAAGCGGAATCCAA
GCTGATATTGAAGCAAGTTGTGGCAATGTGTTTGTCAATAAATCTGTGTTTATATA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[5-193] 6.9E-26 - T[194-338] 3.7E-13 |
| SMART |
WD40_repeat (IPR001680) - T[18-57] 0.68 - T[60-95] 0.027 - T[99-133] 320.0 - T[138-175] 20.0 - T[178-220] 80.0 - T[223-269] 0.01 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[26-274] 8.24E-40 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[44-58] 3.2E-5 - T[82-96] 3.2E-5 - T[256-270] 3.2E-5 |
| Pfam |
WD40_repeat (IPR001680) - T[62-94] 9.7E-4 - T[224-269] 4.3E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[77-95] 8.503 - T[252-278] 9.84 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[82-96] . - T[256-270] . |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[126-278] 10.733 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PK1IP_HUMAN | 32.081 % | 153 | 3.6E-43 |