- Transcript 'Haaura.CG.MTP2014.S3...' >
- Region 'REG00000554' >
- Transcript 'KH2012:KH.C9.371.v1....' >
- Transcript 'KH2012:KH.C9.133.v2....' >
- Transcript 'KH2012:KH.C9.220.v2....'
Transcript Model
Transcript Id
KH2012:KH.C9.220.v2.A.nonSL13-1
Possible name(s)
PAK1IP1; WDR5; WDR5B
Gene model
Location
KhC9 [5,133,058 / 5,135,343]
Amino acid sequence
Length: 353
>KH.C9.220.v2.A.nonSL13-1
ETMFKIVVGCYEQLVIGYTVNIKKGEDEDLTLTYETSFTDHAQTGCIKCLTSGKSYVAAG
STDETICLYDLNEGKELWILTGPVNQVIFPDKQRLISCSDDGTISVWEAQPSGNMIKSLK
GMFTVHPSGKLGMSVSPKDGTLRTWNLLTSRSVYVKNIKKESQIEFIRWSPDGKYYISAS
PKQLNIFELENAECVCECDFDIPVLTIEFLPLNQTQMNRIVVGDNGGNISLYEIPSGKKL
LSYKAHENRVKCVSPMVTPEDIILNGTWLVTASSDECVKVWDVSNSELDQEKTPNCLLTI
PTGARLTCVTVWPKTEPRLPASTESLDTSESATEKKTAKRRRKRKNSAKRNPS
Nucleotide sequence
Length: 1,114
>KH2012:KH.C9.220.v2.A.nonSL13-1
GGAAACAATGTTTAAAATCGTTGTCGGGTGCTACGAACAATTAGTGATCGGATATACTGT
AAACATAAAAAAAGGGGAGGACGAAGATTTGACGCTGACATACGAAACAAGCTTCACAGA
TCATGCACAAACAGGTTGCATTAAATGTTTGACATCTGGGAAATCGTATGTTGCAGCTGG
TTCCACTGACGAAACGATTTGTTTGTACGATTTAAACGAAGGGAAAGAGCTTTGGATTCT
TACAGGACCAGTTAATCAAGTTATTTTCCCGGATAAGCAGCGTCTTATAAGTTGCAGTGA
TGATGGAACAATATCTGTTTGGGAGGCTCAACCATCAGGAAACATGATAAAGTCATTAAA
AGGCATGTTTACTGTTCACCCATCCGGGAAACTTGGGATGTCAGTTTCGCCCAAAGATGG
GACACTAAGGACATGGAATTTACTCACAAGCAGATCTGTGTATGTTAAAAATATAAAGAA
AGAAAGCCAAATTGAATTTATAAGGTGGTCTCCGGATGGAAAATATTACATTTCTGCTTC
TCCTAAACAGCTGAATATATTTGAACTTGAGAATGCCGAATGTGTGTGTGAATGTGACTT
TGATATCCCAGTTCTTACCATTGAGTTTCTACCACTTAATCAAACTCAAATGAATCGAAT
TGTGGTGGGCGATAATGGTGGAAATATATCACTTTACGAAATACCATCTGGAAAAAAGCT
TTTAAGCTACAAGGCACATGAGAACAGAGTCAAATGCGTTAGCCCAATGGTCACCCCAGA
AGACATTATACTTAATGGAACATGGCTAGTGACAGCTTCTTCCGATGAATGTGTTAAAGT
ATGGGATGTTTCAAACTCTGAACTTGATCAAGAAAAAACACCAAACTGCTTGCTGACCAT
ACCCACAGGAGCTAGACTGACCTGCGTTACAGTGTGGCCGAAAACTGAACCAAGACTTCC
TGCGTCAACTGAAAGTTTAGACACAAGTGAATCAGCTACAGAAAAGAAAACAGCAAAAAG
AAGAAGAAAGCGAAAAAATTCGGCAAAGCGGAATCCAAGCTGATATTGAAGCAAGTTGTG
GCAATGTGTTTGTCAATAAATCTGTGTTTATATA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[6-206] 5.9E-26 - T[207-351] 4.0E-13 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[9-284] 1.07E-39 |
| SMART |
WD40_repeat (IPR001680) - T[31-70] 0.68 - T[73-108] 0.027 - T[112-146] 320.0 - T[151-188] 20.0 - T[191-233] 80.0 - T[236-282] 0.01 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[57-71] 3.6E-5 - T[95-109] 3.6E-5 - T[269-283] 3.6E-5 |
| Pfam |
WD40_repeat (IPR001680) - T[75-107] 0.001 - T[237-282] 4.5E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[90-108] 8.503 - T[265-291] 9.84 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[95-109] . - T[269-283] . |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[139-291] 10.733 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PK1IP_HUMAN | 32.162 % | 168 | 6.95E-49 |