- Transcript 'KH2012:KH.C3.124.v2....' >
- Transcript 'KH2012:KH.C11.304.v1...' >
- Transcript 'KH2012:KH.C8.611.v3....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C8.863.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.863.v1.A.SL1-1
Possible name(s)
TRIM2; TRIM3; TRIM71
Gene model
Location
KhC8 [1,157,302 / 1,165,045]
Amino acid sequence
Length: 858
>KH.C8.863.v1.A.SL1-1
FTNTLVSTRQHPPMSPIRTRASSTPDYNIFKENIRFAGHMMASSIDLLTKINDEFLTCQI
CFETYTRPKSLNCQHTFCLKCLEEYTPPNSVRVICPTCRSEQPLTADGINGLKDNFFISS
MSDMLKTVKEIRSEDKDGTSLMCDTCDHDNRKVAIARCLDCTDFLCNECSTWHIRTKLTR
RHKIVSLSEFESGIHNQELKSRAKIYCMIHDGEAAKIYCQSCQCPICHECVESGHSRHRR
CSLKEEVLNQSHQIENLLKTAKEKTDVLRTLQRTLKDIKQTKKLDRDKAESEIERICEIF
INTIHRRKQELTDELHNMHATEVKRINADEDSVEMQLSSLVSCTEFSRKVLEYGTPKEVL
GLNNQMTQILHQLLETHPAATYHNTNQTDNIQFDTNADASVRVIRDNLGRLIIQKATFDE
VVNKVLKQLDSFCVADNHSMVRRNGKTLIQRAESTETKLVVQLGKQGIADGEFESTPNLA
INSVNEVITADYDGAKIQIFDPQGNFKDSFVTEVNKRMCKPAGIAILDNDDIVVCCEDQV
HIWTHEGKSVLGFGKGQFGNCSSIAVNSENRIVVADVGKHCISVFTDTGKMLLQFGAQGK
GESKLVEPRYVACDSQNNIIVSDGGDCSVKKFSSQGEFLLSFGAEGPERGQFQGPRGLCT
DEHDNILVADCWNHRVDIFTPDGCFMRHIATGADSLHFPWCISLTTNGKLIISPTTLIPD
FDQLAGQFDLPNLLSNKVSWWLTSPNAQDPEHAVNGLTNGNIHNTIATSSITRKPSKTLA
SKKSSSSDSDLTAMTPLSPIAPPSTPSLTGQQALDAVLNGTNGGSNGSLSSTGSGKIHYQ
GKVTSLNDHVPVTMVNGT
Nucleotide sequence
Length: 2,963
>KH2012:KH.C8.863.v1.A.SL1-1
ATTTCGCAAATTAGATTTAAAAGCAAAACTTAATATCGTGTAGTAGTTTGGGTAGTTCAC
AAACACCCTTGTTAGTACACGCCAACATCCACCCATGAGTCCGATACGCACAAGAGCGAG
CTCGACACCAGACTACAATATCTTCAAGGAAAACATCAGATTCGCGGGACATATGATGGC
GAGTTCGATCGACCTGCTGACAAAGATAAACGATGAATTTCTTACGTGCCAGATCTGCTT
CGAGACCTATACCAGACCGAAAAGTCTGAATTGCCAGCACACATTTTGCTTAAAATGCTT
AGAAGAGTACACGCCGCCCAACAGCGTCAGAGTGATATGCCCGACTTGCAGGAGTGAACA
ACCGCTCACAGCAGATGGGATCAACGGCTTAAAGGACAATTTCTTTATCTCTAGCATGTC
CGACATGCTGAAGACGGTCAAAGAGATTCGCAGCGAGGACAAGGATGGGACTTCTCTTAT
GTGTGACACATGCGACCATGACAATAGGAAAGTGGCCATCGCTCGCTGCCTCGATTGCAC
CGATTTTCTATGCAACGAATGCTCGACGTGGCACATACGTACAAAGCTCACAAGACGACA
TAAGATCGTCTCTCTATCAGAGTTTGAGTCCGGCATCCACAACCAAGAGCTCAAAAGCAG
AGCCAAGATTTACTGCATGATTCATGACGGGGAAGCAGCAAAGATATATTGCCAGTCCTG
TCAATGCCCGATTTGCCATGAGTGCGTGGAGAGCGGGCACTCACGGCATCGCCGGTGCTC
GTTGAAAGAAGAAGTTCTCAATCAAAGTCACCAGATCGAAAACCTCCTTAAAACTGCAAA
GGAGAAGACAGACGTGCTTCGAACTCTACAAAGAACGCTGAAAGACATCAAACAGACTAA
GAAACTTGATCGAGACAAAGCCGAATCCGAGATAGAGAGAATATGCGAGATCTTCATCAA
CACAATACACAGGCGCAAGCAAGAACTGACAGACGAGCTGCATAACATGCACGCTACCGA
GGTAAAGAGAATCAACGCCGACGAAGACTCCGTTGAAATGCAACTCAGCTCTCTCGTTTC
CTGCACCGAATTCTCACGCAAGGTTTTGGAGTACGGTACACCCAAAGAGGTTCTTGGCCT
CAACAACCAAATGACGCAAATCTTGCACCAGTTACTGGAAACTCATCCGGCTGCTACGTA
TCATAATACTAACCAAACCGATAACATACAATTCGACACCAACGCAGATGCCAGTGTGAG
GGTGATACGGGATAATTTAGGAAGACTCATCATACAAAAAGCCACATTTGACGAGGTTGT
CAACAAGGTGTTAAAGCAACTGGATTCGTTCTGCGTGGCGGATAACCACAGCATGGTACG
TCGGAATGGAAAGACTTTGATACAGAGGGCGGAATCGACGGAAACCAAGCTCGTTGTACA
GCTTGGGAAGCAAGGGATTGCTGATGGCGAGTTTGAGTCTACCCCGAATCTGGCGATCAA
CTCAGTGAACGAAGTTATTACTGCTGATTATGATGGAGCGAAAATCCAGATATTTGACCC
GCAAGGAAATTTTAAAGATTCGTTCGTCACCGAGGTAAACAAACGGATGTGTAAGCCAGC
TGGGATTGCCATCCTCGATAATGATGACATAGTGGTATGCTGCGAAGACCAGGTACATAT
TTGGACACACGAGGGGAAAAGCGTTCTTGGCTTCGGAAAAGGTCAATTCGGCAATTGCTC
TAGCATTGCCGTCAACAGCGAGAACCGCATCGTAGTGGCAGACGTGGGCAAGCACTGTAT
TTCGGTATTCACGGATACTGGAAAAATGCTTCTACAATTCGGGGCACAGGGCAAAGGCGA
AAGCAAGCTCGTGGAGCCGCGTTACGTCGCGTGCGATTCACAAAATAACATCATCGTATC
GGACGGTGGAGATTGTAGCGTAAAGAAGTTTTCTTCTCAGGGCGAATTTTTGCTGAGTTT
TGGAGCCGAAGGACCTGAACGTGGACAGTTTCAAGGACCTCGCGGTCTTTGCACAGACGA
GCATGATAATATTTTAGTGGCGGATTGCTGGAACCATAGAGTGGATATATTCACACCGGA
TGGCTGTTTTATGCGCCATATAGCAACCGGCGCTGACAGTCTACACTTCCCATGGTGCAT
TTCTTTGACAACAAACGGTAAACTGATTATATCACCAACGACACTAATACCTGACTTCGA
CCAGTTAGCTGGACAATTTGACCTGCCCAACCTGCTCAGTAATAAAGTGTCCTGGTGGCT
AACATCGCCAAACGCACAAGACCCAGAACATGCAGTGAACGGACTGACGAACGGCAACAT
TCATAATACAATAGCGACATCTAGCATCACGCGTAAACCGAGTAAAACTTTGGCGAGCAA
GAAATCTTCGTCGAGCGACAGCGACCTAACGGCAATGACGCCTTTATCCCCAATCGCGCC
GCCTTCTACACCGTCGCTTACTGGGCAGCAAGCACTGGATGCTGTACTTAATGGGACAAA
TGGTGGAAGCAACGGTAGCTTAAGCAGTACTGGTAGTGGAAAGATACATTACCAAGGAAA
AGTTACGAGTCTTAACGACCACGTACCTGTTACCATGGTTAACGGAACCTGAACGGACGG
TTTAAGTTTGGGGTAAGCAGCAGGTACGGGACTGCGCGTAGTACGTGGCGATCGTAGTCC
AAGGGGTTGGAAAGAAGACAATTTTGCGAAGTGTGTTTGTTTACAACTTTGAGGGAGTTT
TTGCGTGTATTAGCCTCGCTACGTCGTTTTGTGTACGATGTATATGTTTAATTTCATGTA
TTCTGACGATTTGTGTTACGCCTTTCTGCATGCATACCTTAAGCCGTTAAATGTTGATCG
GCGGTTTTGTACATTTTTGTCTTTTGGATTTAACAAACTGTATCTTGTGTTGCATTTCTC
GCCAAAATGAATTTAACAATAAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[51-108] 3.4E-15 |
| SMART |
Znf_RING (IPR001841) - T[58-98] 4.7E-7 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[58-96] 3.9E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[58-99] 12.976 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[73-82] . |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[138-187] 8.93 - T[202-243] 11.121 |
| SMART |
Znf_B-box (IPR000315) - T[138-187] 6.7E-4 - T[202-243] 3.5E-6 |
| Pfam |
Znf_B-box (IPR000315) - T[204-243] 7.1E-9 |
| CDD |
Znf_B-box (IPR000315) - T[205-243] 8.96593E-10 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[447-643] 1.1E-43 - T[644-717] 5.8E-17 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[462-503] 6.908 - T[545-588] 11.328 - T[592-635] 10.835 - T[639-682] 14.926 |
| Pfam |
NHL_repeat (IPR001258) - T[558-585] 1.1E-5 - T[652-679] 7.2E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LIN41_HUMAN | 23.739 % | 177 | 6.54E-46 |
| TRIM2_HUMAN | 32.061 % | 166 | 1.11E-42 |
| TRIM3_HUMAN | 32.616 % | 165 | 2.96E-42 |