- Transcript 'KH2012:KH.C12.107.v1...' >
- Clone 'cicl047j18' >
- Transcript 'KH2012:KH.C8.842.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.842.v1.A.ND1-1
Possible name(s)
MYD88; SIGIRR; TLR3
Gene model
Location
KhC8 [1,728,048 / 1,731,980]
Amino acid sequence
Length: 436
>KH.C8.842.v1.A.ND1-1
MSVHVYFVVCISVITWVYLKYLISVDILGVTVKMSAPLSLQDQEKEFNKLANEQERARLE
SGESLHGGCDKLAAELDKKPENEGACGGASCLFPPPSYMQQSHASADPNPLGDISAKEDE
RNNVISYAVGMPRSDFCSTKLRHLRFDSRRQLGLHLDPERATVQNWKSLADLMGFSNLEI
LNFENERHKTRCVLEEYEVRQPSATIGNLCMMLDAIGRQDVLTDMEPWFARDSNMAVERS
HSSMSSNFDLSPSRLLSSPTSLPIQQNAVTSSWNFGSTFPAQEKPPIDQGTADIQNKSYD
AFLLYDAADSKFIREEFLPKVETDAKIKLFVPDRDLDAGVQAFQSQLEFMLRRCSKLVVI
LSDEFLKNPDSQWSLNVGVSLDPGSKGKKIIPVIYKKITEPNLLAGINPCNRTRVLEDSW
FWNSVIRSLGGVQDNK
Nucleotide sequence
Length: 1,889
>KH2012:KH.C8.842.v1.A.ND1-1
ATGAGTGTTCATGTTTACTTTGTTGTGTGTATTTCAGTAATAACTTGGGTATATTTAAAA
TATTTAATATCAGTTGATATACTTGGTGTGACTGTAAAAATGTCTGCCCCACTTTCACTG
CAAGACCAAGAAAAGGAATTTAATAAGCTGGCAAATGAGCAAGAAAGAGCTCGTTTGGAG
TCTGGTGAAAGTTTGCATGGTGGCTGTGATAAATTGGCGGCTGAACTAGACAAGAAGCCG
GAAAATGAAGGGGCTTGTGGAGGTGCCTCATGTCTTTTCCCCCCACCTTCATACATGCAA
CAATCTCATGCGTCTGCTGATCCAAATCCACTTGGTGACATTTCCGCAAAAGAAGATGAA
AGAAATAATGTTATAAGTTATGCGGTCGGAATGCCTAGAAGTGATTTCTGCAGCACCAAG
CTGAGACATCTACGTTTCGACTCACGCAGACAGCTGGGTTTGCATCTTGACCCTGAAAGA
GCCACAGTTCAAAACTGGAAATCTTTGGCTGATTTAATGGGCTTCTCTAACCTCGAGATT
TTAAATTTCGAGAATGAGCGCCACAAAACCAGATGTGTTTTGGAAGAATATGAAGTAAGG
CAACCATCTGCTACCATTGGCAACTTGTGTATGATGTTAGATGCAATTGGTCGTCAAGAT
GTTCTCACAGATATGGAACCATGGTTTGCTCGCGACTCTAACATGGCTGTGGAACGAAGT
CACTCAAGCATGAGTTCTAATTTCGACCTTAGTCCAAGTAGATTGTTGTCAAGTCCAACT
AGCTTGCCTATTCAACAAAATGCTGTAACTTCATCATGGAATTTCGGATCAACTTTTCCT
GCCCAAGAAAAGCCTCCAATTGACCAAGGAACAGCAGACATTCAAAACAAATCCTATGAT
GCATTCTTGTTGTATGATGCTGCTGACAGCAAATTTATTCGGGAAGAATTTTTGCCCAAA
GTTGAAACTGATGCAAAAATCAAACTCTTTGTACCGGACAGAGATTTAGATGCAGGAGTT
CAAGCTTTTCAGAGTCAGCTGGAGTTTATGCTCAGAAGGTGTTCCAAACTTGTTGTCATC
TTATCAGATGAGTTCTTAAAGAACCCTGATAGTCAGTGGTCGCTAAATGTGGGCGTGTCT
CTTGATCCAGGCTCTAAAGGCAAAAAGATCATTCCAGTTATTTACAAGAAGATTACCGAG
CCAAACTTGCTGGCCGGAATCAACCCATGCAACAGAACAAGGGTTCTAGAAGATTCTTGG
TTTTGGAACAGCGTTATTCGGAGTTTGGGTGGGGTGCAAGACAATAAATAAACAAAGTTT
TGATGTAAATTTTTCTTTAGGTATTTGTACGTTTTTGTTTTCTATACTATATTGCACTAT
ATTCCATTGTTCCTACCCGTATGTTTGCCAAATCGTCTTGTATTGTTGCAGTCAATATTA
TGTAAATGTATTTTTGTTACACAATAGGCTATTTAAAGCAATGGGGATTCCAGAAGTTTA
ACAATTGTTAATATAGTGAGGTAATCTGAAAGCAACATTTATATGCTTTGTCTGACAATA
CTGAGTTTACAATTCAATTAGTTACATGTCTAAATCACAGTTCCCATGTCAGGCTTTGAG
TAGGGACTCACCCATAAAGAATAGAATAATTATGTTTAATGTGACTTTCTATTTTTAACT
TTTCTCATTATAAGGTCTTAAAAGTGTATACTTACAATCATACACAATTTTTCTAACTCC
AATAACATTTAAAATGTATTTTAATTCAAACCCTTTGTAAATTTGTTCACTGCCATTGTG
TCGATCGCTGTCTTTGACTGATGGTCTGAAACCTTTTACATCATGTACACATTGGCACTG
TAAATACAATTAATGAATTATATGTCTCA
| SUPERFAMILY |
DEATH-like_dom_sf (IPR011029) - T[129-239] 3.3E-16 |
| CDD |
MyD88_Death (IPR034249) - T[148-224] 5.65966E-25 |
| Pfam |
Death_domain (IPR000488) - T[150-226] 7.0E-8 |
| ProSiteProfiles |
Death_domain (IPR000488) - T[165-229] 11.58 |
| Gene3D |
Toll_tir_struct_dom_sf (IPR035897) - T[292-431] 6.7E-21 |
| SUPERFAMILY |
Toll_tir_struct_dom_sf (IPR035897) - T[295-430] 8.63E-18 |
| ProSiteProfiles |
TIR_dom (IPR000157) - T[297-376] 15.251 |
| SMART |
TIR_dom (IPR000157) - T[298-432] 4.2E-4 |
| Pfam |
TIR_dom (IPR000157) - T[299-402] 1.1E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MYD88_HUMAN | 27.797 % | 124 | 1.29E-32 |