Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C8.511.v1.A.ND1-1

Possible name(s)

MEOX1; MEOX2; PDX1

Gene model

KH2012:KH.C8.511

Location

KhC8 [4,603,146 / 4,605,539]

Sequences

Amino acid sequence

Length: 216

>KH.C8.511.v1.A.ND1-1
GKLNGTCAVSFSSATVIHKASVSTTVLISLWSNYSYYLFSMCDAYYQPECVIDGDCNQFT
QLQSIYDSNPQEVQTVLDSPPTCASHAESYPIQYSGQYYDNTHQTLHNLHWNQAPPVRCQ
EQVNNFSSHQHVTQPESQVSYISSTSSPDTSEVEIRKKERTSFTHDQVRQLEADFMENHY
LTRLRRYELALKLNLTERQIKVWFQNRRMKLKREKT

Nucleotide sequence

Length: 802

>KH2012:KH.C8.511.v1.A.ND1-1
GGGAAGTTAAACGGGACATGCGCTGTTAGTTTTTCCTCAGCTACTGTTATACACAAAGCT
TCAGTGTCAACCACAGTGTTGATTAGTCTGTGGTCAAATTATAGTTACTACCTTTTCAGT
ATGTGTGATGCGTATTATCAACCGGAATGTGTTATAGACGGAGATTGTAATCAATTCACG
CAACTACAAAGTATTTACGATAGCAATCCTCAAGAGGTCCAGACAGTTCTTGATTCCCCT
CCAACATGTGCAAGCCACGCAGAGTCCTATCCTATTCAGTATTCGGGACAATACTACGAC
AACACACACCAGACGTTGCACAACCTGCATTGGAACCAAGCACCACCAGTGAGATGCCAG
GAACAAGTAAACAACTTTAGCAGCCATCAGCATGTGACGCAACCTGAGAGCCAAGTTTCA
TATATTTCTTCAACGTCATCGCCAGATACCTCCGAGGTCGAGATTCGTAAAAAAGAAAGA
ACTTCATTTACTCACGACCAAGTCCGTCAACTAGAAGCAGATTTCATGGAGAATCATTAC
CTTACAAGACTTCGACGATATGAGCTTGCGCTTAAACTGAACTTAACAGAACGACAGATA
AAAGTCTGGTTTCAAAACAGACGGATGAAACTAAAGCGTGAAAAGACTTGAAACTGCAGA
TTCTAGGAAATGTGTTTCTGCTTCTGTCTTGCAGGCAATCTGCATATGTGTTTCATTATG
TCTTATTATGTATATAGCTGAACCTATACGTGTATGCACGCTTCCAAGGTATATATACCA
AACAATACAAACTACACTTGAA

InterProScan

SUPERFAMILY	Homeobox-like_sf (IPR009057) - T[137-215] 8.55E-25
ProSiteProfiles	Homeobox_dom (IPR001356) - T[154-214] 21.589
SMART	Homeobox_dom (IPR001356) - T[156-216] 8.8E-21
CDD	Homeobox_dom (IPR001356) - T[157-215] 1.19829E-24
Pfam	Homeobox_dom (IPR001356) - T[157-213] 2.7E-21
PRINTS	Homeobox_metazoa (IPR020479) - T[178-189] 5.2E-8 - T[193-203] 5.2E-8 - T[203-212] 5.2E-8
ProSitePatterns	Homeobox_CS (IPR017970) - T[189-212] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PDX1_HUMAN	54.545 %	80.9	2.42E-18
MEOX2_HUMAN	66.667 %	96.3	6.54E-24
MEOX1_HUMAN	67.797 %	94	1.77E-23