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- Transcript 'KH2012:KH.C8.482.v2....'
Transcript Model
Transcript Id
KH2012:KH.C8.482.v2.A.SL3-1
Possible name(s)
NKX2-3; NKX2-5; NKX2-6
Gene model
Location
KhC8 [4,060,094 / 4,061,421]
Amino acid sequence
Length: 259
>KH.C8.482.v2.A.SL3-1
SEKSDNVSTCSTSPEETEKKKTEDDTLKSRHRTRRKPRVLFSQAQVFELERRFKQQRYLS
APEREHLAQILKLTSTQVKIWFQNRRYKCKRMRQDKTLELASIGPPRRVAVPVLVRDGKS
CLGGPGQVSHNAAPYNVTVTRYHNYPSSYSSCGYNSYPPNPPGYGPSAAAAAAVAGAAAA
AYGNAATNGYNGFPPSMNGGQPGASPYPTPGLHQQHPPSMGVGNSPFQTSTVPTGHHMSQ
GGLHHHTPTDYMYKLGLCT
Nucleotide sequence
Length: 1,327
>KH2012:KH.C8.482.v2.A.SL3-1
ATTCGGAAAAGTCGGACAACGTCAGCACATGTAGCACTAGCCCCGAAGAAACTGAAAAAA
AGAAAACAGAAGATGACACGCTAAAATCCCGACACCGGACCAGGCGAAAACCGCGTGTGC
TGTTCTCCCAGGCACAAGTATTTGAGCTTGAGCGAAGATTTAAACAACAAAGATACTTGT
CTGCTCCGGAAAGAGAACATCTGGCCCAGATTTTAAAACTGACTTCCACCCAGGTCAAGA
TCTGGTTCCAAAATCGTCGATACAAATGTAAACGAATGCGACAAGACAAAACCTTAGAGC
TGGCCAGTATTGGACCTCCACGAAGAGTTGCAGTTCCTGTTTTAGTTCGCGACGGGAAGT
CATGTCTCGGTGGGCCTGGTCAAGTATCACATAACGCGGCTCCATACAATGTGACTGTTA
CACGCTACCACAATTACCCAAGTTCATATAGCTCTTGCGGTTATAACTCCTACCCCCCTA
ACCCACCCGGTTACGGGCCAAGCGCTGCCGCAGCAGCAGCTGTAGCAGGAGCGGCCGCTG
CAGCATACGGGAACGCTGCTACGAACGGTTATAACGGATTTCCGCCGAGCATGAACGGTG
GACAGCCCGGTGCGAGCCCCTATCCTACTCCAGGGCTGCACCAACAGCACCCACCCTCTA
TGGGGGTCGGGAATTCACCGTTTCAGACCTCGACTGTACCTACAGGCCACCATATGTCTC
AAGGGGGGTTGCACCATCACACACCAACGGACTATATGTATAAGCTTGGGCTGTGCACGT
GATTTAAACTGATATATTGTGCATATATTGTTGCTGTGCATGTTCGTGCAATGTACCATG
TTCCGCTACGACAAATAATCATGCCAAACCTTTAATTTGGTACTATTATACCAATTTCTC
GGCGACTCGGTACAACTTTTATTTATGTCTACTTTTAAACCCTGGACTTAGGCTTTCAAC
TGGGGAAACTAGGACTGCCATTTTAAACTCTTTAATGCTACTTAGTATATTGCTTTTCAT
TTATGCAGTGTTTTTAAAAAGTTATATCTCGATATCCCGTAACACGTTTGTTTATTTTTA
CTTCGTACTATGCTGAGTCTACTCTACAATGAGCTTCACATGACTTGGCAAAACCAATCT
AGGCTTAATTATGTAACAATACTTATTGTTTCGCACTCTCAGCTAAATTAAAACGTACCT
CCCGAATTAAACTTATACAGTACACAGCTGCATATTACTTATAATGTGATTTTGGACGTG
TGCAATTATGTTGGTCGGCTGCTGGTTTAAAAAGTCGAATTTCTGAATAAACTTATTTTG
CCACATT
| PANTHER |
NKX-2.5 (IPR033629) - T[3-179] 9.6E-74 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[27-93] 7.27E-23 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[32-92] 20.099 |
| SMART |
Homeobox_dom (IPR001356) - T[34-96] 3.0E-24 |
| CDD |
Homeobox_dom (IPR001356) - T[35-93] 2.09254E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[35-91] 3.8E-20 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[56-67] 1.1E-6 - T[71-81] 1.1E-6 - T[81-90] 1.1E-6 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[67-90] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NKX26_HUMAN | 58.58 % | 167 | 1.41E-50 |
| NKX25_HUMAN | 52.83 % | 156 | 5.46E-46 |
| NKX23_HUMAN | 57.988 % | 153 | 1.8E-44 |