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  1. Transcript 'KH2012:KH.C8.396.v1....'

Transcript Model

Transcript Id

KH2012:KH.C8.396.v1.A.nonSL6-1

Possible name(s)

FOXD1; FOXD3; FOXD4

Location

KhC8 [2,622,953 / 2,625,590]

Sequences

Amino acid sequence

Length: 424

>KH.C8.396.v1.A.nonSL6-1
FIFQHRIRCVMMTVQCCVQYNTSEDKSDHKRFMMNRIESHGASRDNVIGSAYPQQQADAI
LQNWKSSAAGPTRNKHRDGESRSPVPGKPYQRPDVTKSSPNEMSAIECMRNAVQQMQEKV
QASAAKTTQHSALNDTYVDVTSLSSPATLVRESFRQNWLPKSPMVDERSSSPVSSEGNPP
ARCASLSGEDETREKDEELRKIGEEMEEYSNESKKNVKPPYSYIALITMSILQSPDKKLT
LSGICDFIMNRFPYYKEKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTMDPEAED
MFDNGSFLRRRKRFKRQQRDPFRDNVLAALNAASPYGRPYGLAATQQAAIMAASMNPYAY
MNPLPAHIPLLPPHEINNRQAALMAFGSSRLPQMTTESSVSIFPTLPMQSNTEHGCENPS
RELR

Nucleotide sequence

Length: 2,271

>KH2012:KH.C8.396.v1.A.nonSL6-1
GTTCATATTTCAGCATCGAATCCGTTGTGTGATGATGACAGTGCAGTGTTGTGTGCAATA
TAATACAAGCGAGGATAAGAGTGATCATAAACGTTTCATGATGAATCGTATTGAATCTCA
CGGAGCATCACGAGATAATGTCATCGGTTCGGCCTACCCTCAACAACAAGCAGACGCCAT
TTTGCAAAACTGGAAATCATCGGCGGCAGGTCCGACTCGAAACAAACATCGTGACGGGGA
ATCAAGGTCGCCGGTCCCAGGCAAACCTTACCAAAGACCCGATGTCACAAAGTCATCACC
AAATGAGATGTCAGCCATAGAATGCATGAGAAACGCAGTTCAACAGATGCAGGAAAAAGT
TCAAGCTTCAGCGGCAAAAACAACTCAACATTCAGCTTTGAACGATACCTACGTAGACGT
GACATCATTATCGTCACCAGCCACCCTTGTACGAGAGTCGTTTCGCCAAAACTGGTTGCC
GAAATCACCGATGGTGGACGAACGATCTTCGTCGCCTGTGTCGTCAGAGGGAAACCCCCC
TGCCCGCTGTGCGTCATTAAGCGGCGAGGACGAGACGAGAGAGAAAGATGAAGAATTAAG
GAAGATCGGAGAAGAAATGGAAGAATATTCGAACGAATCAAAGAAGAATGTAAAACCTCC
GTATTCATACATCGCTCTTATAACAATGTCGATACTTCAGTCTCCCGATAAGAAACTTAC
TCTGAGTGGGATTTGCGATTTCATCATGAACCGTTTCCCTTATTACAAAGAGAAGTTCCC
AGCTTGGCAGAACTCGATACGTCATAACCTTTCACTGAACGACTGCTTCGTGAAAATTCC
ACGCGAGCCTGGTAACCCTGGAAAGGGAAATTACTGGACCATGGATCCTGAGGCGGAAGA
TATGTTCGACAATGGTTCCTTTCTACGAAGAAGAAAACGATTCAAACGACAACAGAGAGA
TCCGTTCCGGGATAATGTCCTTGCAGCTTTGAATGCAGCTAGCCCTTACGGTCGTCCATA
CGGTCTTGCAGCAACACAACAAGCAGCTATCATGGCAGCATCAATGAATCCATATGCTTA
CATGAACCCACTGCCTGCACATATACCGTTGCTACCTCCGCATGAAATCAACAACAGACA
AGCTGCTTTAATGGCTTTTGGATCATCAAGGTTACCTCAGATGACGACCGAATCATCTGT
GTCCATCTTCCCCACCCTTCCCATGCAATCCAACACTGAGCACGGATGCGAGAATCCAAG
CCGCGAACTTCGCTAACGCTGTTGCTCTTCACTCCGCTAGGGAATCCATTAGAGGGCAGC
AACAAGCCAAGAAACTTCCTCGTAATTCTCCTTTTTCCATCGAATCATTGATCGGAAAGT
CCTCCGATTCTGCTCCCACAACATCCGAACACCACGGCTCCGGATGTTCTTCTCCTTCCT
CCCAAACCTCCGGAAGAGAGAACCCGGTTTCTCCCGTTTCAAAACTCAACCCCGGATTCG
GTCCCTGTATCACTTCGACTCCGAAGTACTCCGGATCAGATCGGGAGCATTTTTTCCAAG
AAACAGGAAGACGCGAATCCGAAGTCCGCGAATCTGCAGCGGCTGCTTCCCGAAGAAGTT
CAGTTTCACCATCAGACTCATTATCCCCTCCCCTGCCGGCTTCACAGCCTTCTTTTCCCG
CGTTGGGTAGCCAATTGAACCCAATGTTTCCATACAACATGGCGCTAAGTTCTCGTATGT
TCCAACAGAACCAATCGTATCCACCAAACCCCTCTATCGCGCAATCGGCGCAACAGTTAA
ACGCACTATCAGCCGCAGGTTTTCTTCCGTCATTAAACGGCTGGCCTTGTTTTGGCAGAA
CTTAAACAAAAAAATGCAATTTTACGCCAAAACCTCCACAGAAGTGGCAGCTGTGAAACC
TGGTACATTTCTAAGCAATCATAAGCTTTATGTTGCTTACTACACTTCACTCCTTTAGTT
ATTAAACCGTATATACTTCAGCGTGTTTAAATGCGACTCTAATTGGACCCATTAGCGTAC
AATGCAACACCACCATATTGAAAATTATATTCCAAACATAATACACTGCCATTTATACTG
AGATTATGTATTATATGCAGTACGCATTCCGCAATTACTATACCACACTGTCCATACACA
ATCTCAGACCGTGGTTGTATCTATTTTAAGCATGACACAATTTTACGTTGTTTTCGTTTT
TTTTGACTTTTGTGTTTTTGTTCCGACAAATTAAAATTCTAAACTAAAAAA

InterProScan

Gene3D
WH-like_DNA-bd_sf (IPR036388) - T[204-313] 8.0E-46
SMART
Fork_head_dom (IPR001766) - T[216-306] 1.9E-60
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[217-312] 1.86E-39
ProSiteProfiles
Fork_head_dom (IPR001766) - T[218-312] 39.54
CDD
Fork_head_dom (IPR001766) - T[218-295] 7.49577E-52
PRINTS
Fork_head_dom (IPR001766) - T[218-231] 3.3E-22 - T[239-256] 3.3E-22 - T[262-279] 3.3E-22
Pfam
Fork_head_dom (IPR001766) - T[218-302] 2.2E-37
ProSitePatterns
TF_fork_head_CS_2 (IPR030456) - T[262-268] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
FOXD4_HUMAN 76.786 % 199 1.82E-59
FOXD3_HUMAN 75.362 % 201 1.69E-59
FOXD1_HUMAN 87.778 % 182 8.44E-53