- Transcript 'KH2012:KH.C8.273.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.273.v1.A.SL4-1
Possible name(s)
RAB11FIP1; RAB11FIP2; RAB11FIP5
Gene model
Location
KhC8 [4,706,158 / 4,715,252]
Amino acid sequence
Length: 344
>KH.C8.273.v1.A.SL4-1
FQIMWSPTDVVVTVRQARNLLVKGKSGSNEAYATIEFCKDKYLTSTDKSTTPRWFTQCSF
TLPQGGVFHNKIVVHVTVMNKRHGKLGLESDDFLGQVSVPLSALNSCDNKERARWYELNG
KKSGNKKERGEVEISFKFISQEKSQVLPVKKEKPMKIISTGFRSKLRRRSEDEDSGVGIS
DGDRTSSMGRGRSYENLSMPSITDQPMPTPFERTFRTSSTNSSPGSLVSARGSAKLKNSN
LSSKAMSVEVLHRPPTNQTTSLYRSNSDVKELGKVSTIHEEPDTTLQTMSHKDLVKLASK
QKMIIADKNQTIRELEDYIDSLLVKVMVCTPDILDVQSSHITKL
Nucleotide sequence
Length: 1,670
>KH2012:KH.C8.273.v1.A.SL4-1
ATATTTGTAGTTCCAAATAATGTGGAGTCCTACTGATGTTGTAGTGACTGTTCGACAGGC
AAGAAACTTGTTGGTTAAAGGAAAAAGTGGTTCCAATGAAGCATATGCTACTATTGAGTT
CTGCAAAGATAAATATTTAACCTCCACAGATAAATCGACGACTCCTCGATGGTTCACACA
GTGTTCATTCACCCTGCCACAAGGTGGTGTCTTTCACAACAAGATAGTTGTCCATGTTAC
TGTAATGAACAAGAGACATGGAAAACTGGGCTTGGAATCCGACGACTTTCTCGGCCAAGT
TTCAGTCCCTTTATCAGCACTCAACTCGTGTGACAACAAGGAACGTGCAAGATGGTACGA
GTTAAATGGCAAAAAGAGTGGAAATAAAAAAGAGAGAGGGGAAGTAGAGATTTCATTCAA
ATTCATCAGCCAGGAAAAGAGCCAAGTCCTCCCTGTTAAAAAAGAGAAACCAATGAAGAT
CATCAGTACTGGCTTCCGGAGTAAGCTGCGAAGAAGATCAGAAGATGAGGATTCAGGTGT
CGGGATCAGTGACGGGGATCGAACATCTAGCATGGGAAGAGGCAGATCATATGAGAATCT
ATCAATGCCTTCAATAACTGACCAGCCTATGCCGACTCCGTTTGAAAGAACTTTCCGCAC
AAGTTCAACGAACAGCTCTCCTGGTTCATTAGTATCAGCAAGAGGGTCTGCAAAATTAAA
AAACAGCAACCTATCTTCAAAAGCCATGAGTGTAGAAGTGCTTCATCGCCCTCCAACCAA
CCAAACCACCTCATTATATCGGTCTAACTCAGATGTCAAAGAACTTGGAAAAGTGTCCAC
CATACATGAGGAACCAGACACTACATTACAAACAATGTCACATAAAGACCTTGTTAAGTT
GGCAAGCAAACAGAAGATGATAATTGCCGACAAGAACCAAACTATAAGGGAGTTAGAAGA
TTACATTGACAGCCTTCTAGTCAAAGTAATGGTTTGTACACCAGATATACTGGATGTTCA
GAGCAGCCATATCACTAAACTGTGAACATTGATATACGATTAGGAAATATCATTTGTAGA
GAAAACGGTGCTTACGTATTTTCATATCAAATTTATTTTTACCCCATAGCGCTCACACCA
TACCTTTTCTTTTTATTGTTTTTTTTCAACCTTTTTTTCGGAATGTTTTTTTTTTGATCT
GAATCTGAAGCAATGGATTTCTACTTGCATTGTTTTTAAGCAATAATCTGTTTTTGGGAA
AAAACTAAAATAATAAATTTTCAATTTCTATAGCATAGTGTTAATTTTATCCCTGTGTTG
CAAAATCACATCAGTGTAATGTATTATAAACCCCTCGGTGAATTATTTACTTATTCTAAT
TTCTTTACCTTTTGCTCTTTTAACATTTTTTTATGGTGCACCATGTTTGTCGTGCTTAAT
GATTATAAAAAGCTGCAAGTTCGCAAAGTGAGTTATTTTGCCAAACTTCATATTGACTAA
ATGTTATTGCGCTACATGTTCACTTTTTTTAAATAGCCTGTATTTTCTTTAATATCAACC
GTACAAAACTATTTTTATGTTATTGCTAGTTTGTGTTTACCTTCTGTTGTTGTTCTGCCT
TACCTTGAAGCAAAATGTATATTTGTGAGATTAAAATAGTACAGTTCTGT
| PANTHER |
FIP_classI (IPR037789) - T[4-262] 4.5E-99 - T[268-343] 4.5E-99 |
| Gene3D |
C2_domain_sf (IPR035892) - T[8-159] 4.2E-20 |
| SMART |
C2_dom (IPR000008) - T[9-113] 7.8E-8 |
| ProSiteProfiles |
C2_dom (IPR000008) - T[10-98] 8.858 |
| Pfam |
C2_dom (IPR000008) - T[10-118] 1.5E-13 |
| ProSiteProfiles |
Rab-bd_FIP-RBD (IPR019018) - T[275-337] 9.489 |
| Pfam |
Rab-bd_FIP-RBD (IPR019018) - T[291-336] 4.4E-10 |
| SUPERFAMILY |
FIP-RBD_C_sf (IPR037245) - T[307-337] 5.49E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RFIP1_HUMAN | 37.143 % | 92.8 | 1.35E-20 |
| RFIP2_HUMAN | 37.143 % | 89.7 | 9.07E-20 |