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  1. Transcript 'KH2012:KH.C8.512.v2....' > 
  2. Transcript 'KH2012:KH.S404.1.v3....' > 
  3. Transcript 'KH2012:KH.C10.464.v1...' > 
  4. Transcript 'KH2012:KH.C8.190.v4....' > 
  5. Transcript 'KH2012:KH.C8.248.v6....'

Transcript Model

Transcript Id

KH2012:KH.C8.248.v6.A.nonSL8-1

Possible name(s)

COL19A1; COL21A1; COL24A1

Gene model

KH2012:KH.C8.248

Location

KhC8 [5,996,820 / 6,014,942]

Sequences

Amino acid sequence

Length: 753

>KH.C8.248.v6.A.nonSL8-1
RMLGKNTRKQWKLWLVNDGDGSEQIGVNLDGANRLVELISRGNDGYVHKATFVNTDALFD
DKWHKLVMSVEEDQVSLYIDCNLVDTLPFTDRAPADVDGDTLVGRIGKNNAKSAAIELQW
MIIHCDPTRAHRESCDELPALCPVCPAGPAGQPGPPGPPGENGIQGDPGPDGFAGIDGLD
GERGPPGPQGFQGVSGQKGEPGEIGAPGTEGLIGPAGIPGSLGLPGPAGPQGPPGDVNTV
EGPPGRPGAPGPRGPPGLPGPSGGATAGDIGSGADPSGPVYVGPPGYPGPKGHKGYKGEP
GPDGKQGPKGDAGPEGEQGPAGPGGESGPRGARGYPGEDGRKGEVGPAGVPGEMGAPGEQ
GLQGAEGPPGVPGERGAKGGTGDRGPLGNPGGPGLPGEPGLPGRNGADGIPGTPGERGRP
GESGPKGTEGAIGAPGNSGEQGIQGQPGERGFPGIKGHKGASGMTGAKGEPGNDGNEGPE
GNPGPQGTAGTPGERGSPGTPGENGQRGPGGPPGIIGPEGPRGQSGPRGPQGESGPRGVP
GLQGPPGRMPSDQKILEVCRRVLRDEMRGMMAATRPRGIITGGAPGRPGPVGPPGQQGPQ
GQSGLPGKTGMQGAQGVPGMPGRTGPKGFGGDKGDRGAPGIGSVGLPGPAGPPGPQGSPG
FGKDGRNGERGEPGLPGPTGYIGPQGSVGPPGYCDPSTCLMGQVRGIQQPKGPNGQKGPD
AADSPLGSEPPAGTNRRRAARTRHRPEMNDIQF

Nucleotide sequence

Length: 2,783

>KH2012:KH.C8.248.v6.A.nonSL8-1
AGAATGCTGGGAAAGAACACAAGAAAGCAATGGAAGCTTTGGCTGGTCAACGATGGAGAT
GGTTCAGAACAGATTGGAGTCAATTTGGACGGAGCCAACCGATTGGTTGAGCTAATATCA
CGTGGCAATGACGGTTACGTACACAAAGCCACGTTCGTGAACACGGACGCTTTATTTGAT
GATAAATGGCACAAACTCGTCATGTCCGTCGAGGAAGACCAAGTCTCATTGTACATTGAT
TGTAACTTGGTTGACACGCTACCCTTCACTGATCGCGCACCTGCCGATGTAGATGGTGAC
ACGTTGGTGGGGAGGATCGGGAAAAACAACGCAAAGTCTGCGGCAATTGAACTACAGTGG
ATGATAATACATTGCGACCCGACAAGAGCGCATAGGGAATCATGCGACGAACTACCTGCC
TTGTGCCCGGTTTGTCCAGCGGGACCTGCAGGACAACCAGGACCCCCAGGACCACCCGGT
GAGAACGGAATCCAAGGAGATCCTGGACCAGATGGTTTCGCTGGAATTGATGGACTTGAT
GGTGAAAGAGGACCACCAGGACCCCAGGGGTTTCAGGGAGTCTCTGGTCAAAAGGGAGAA
CCAGGAGAAATTGGTGCACCTGGAACAGAGGGACTCATTGGACCTGCAGGGATACCGGGA
AGCCTTGGGTTACCTGGTCCAGCTGGCCCACAAGGACCTCCAGGTGATGTGAACACCGTT
GAGGGACCTCCTGGACGACCAGGTGCTCCTGGACCAAGGGGACCACCAGGACTTCCCGGA
CCATCTGGAGGCGCTACGGCTGGTGATATTGGTTCAGGGGCTGATCCATCTGGCCCAGTC
TATGTTGGACCACCAGGTTATCCCGGACCCAAGGGTCATAAGGGATACAAAGGTGAACCC
GGTCCTGATGGAAAACAAGGTCCAAAGGGTGATGCCGGTCCTGAGGGAGAACAAGGACCA
GCTGGTCCTGGCGGTGAATCTGGTCCACGTGGGGCACGAGGTTACCCGGGAGAAGATGGG
AGAAAGGGAGAAGTAGGCCCTGCAGGAGTACCTGGAGAAATGGGTGCACCTGGTGAACAA
GGTTTACAGGGAGCTGAAGGTCCTCCTGGAGTCCCAGGAGAGAGGGGAGCCAAGGGAGGA
ACTGGGGATCGAGGTCCTCTTGGAAACCCTGGAGGACCCGGACTTCCTGGAGAACCGGGT
CTACCCGGTAGAAATGGAGCTGATGGTATCCCAGGAACCCCAGGAGAACGGGGACGACCA
GGAGAGTCAGGACCAAAAGGAACAGAAGGTGCCATAGGAGCTCCTGGTAATTCAGGAGAA
CAAGGTATTCAGGGTCAACCTGGTGAACGTGGATTCCCTGGAATCAAAGGACACAAAGGA
GCATCTGGTATGACTGGCGCCAAGGGAGAACCTGGTAATGATGGAAATGAGGGACCAGAA
GGCAACCCTGGACCACAGGGAACTGCTGGAACTCCAGGAGAACGTGGATCACCAGGAACA
CCGGGTGAAAATGGGCAACGTGGGCCAGGTGGACCACCGGGCATCATTGGACCAGAAGGA
CCCAGGGGCCAATCTGGGCCACGAGGACCACAAGGAGAATCTGGACCAAGAGGCGTCCCT
GGATTACAAGGCCCTCCTGGGCGCATGCCAAGTGACCAAAAGATTCTGGAAGTTTGCCGT
AGGGTGCTTCGAGATGAGATGAGAGGTATGATGGCAGCAACCAGACCCCGAGGTATCATC
ACTGGTGGAGCTCCTGGAAGACCTGGACCTGTTGGACCACCTGGACAGCAAGGACCACAA
GGACAATCTGGTCTTCCTGGTAAAACTGGAATGCAAGGTGCACAGGGTGTTCCTGGAATG
CCTGGACGTACTGGACCCAAAGGATTTGGTGGTGATAAAGGTGACAGAGGAGCGCCAGGA
ATTGGCAGCGTTGGTCTTCCAGGACCTGCTGGTCCTCCAGGACCCCAAGGATCACCAGGG
TTTGGTAAAGATGGTCGTAACGGAGAACGTGGTGAACCCGGCTTACCTGGACCCACAGGT
TACATTGGGCCACAGGGTTCTGTTGGTCCTCCTGGTTACTGCGACCCATCTACTTGCTTG
ATGGGTCAAGTCCGTGGCATTCAACAACCTAAAGGTCCAAATGGCCAGAAAGGTCCTGAT
GCAGCGGACAGCCCATTGGGCTCAGAACCACCTGCGGGCACAAACCGTCGCCGTGCTGCA
CGTACCCGCCACCGACCCGAGATGAATGATATTCAGTTTTAACTGAAACTAAAAACTACT
TTGATTACCGCGCGATCGCACCGTGTGGAGATATGACTCAAAATTTGTAATGTAACCAAT
TTTATCTGCGTGCGTTATATTTTTCCATCACCGTGCTACAGTATATTGTTGCATCATATT
AGCCGTCGTCATGTTGTCGTCACTGCTTGTTGTCAGTTTGTTTTCCGAAGCGATTTTACA
TTTTATTACATTTTCACGCCTAAAAAGTGTCATGATTTACTGAGATGGCTGCGTTTGTAC
AAGAGATTGGAACTTTTTCATATAGTAGGATTTTGAAAGACACCTTTGGCGTACAATATC
CAAATATCCGGATCGTGTTTCAAATAACTAACAACGCTTTATGGGTGTTGTAAGGATACG
AATTTGCAATTTTTGTTTACTACTAAACGGATGAGAAAATACAATGAAAAAGTGTCCCAT
TTCCCCCCACCCTACTATACAACATTTCACTAAAACTAAAATATCTATGTTGTCCAGTGT
GGTTTGGACATTAGTTATTACAA

InterProScan

SMART
Laminin_G (IPR001791) - T[1-127] 9.5E-6
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[7-132] 5.25E-19
Pfam
Collagen (IPR008160) - T[148-206] 6.1E-10 - T[493-548] 1.5E-7 - T[583-640] 4.0E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COLA1_HUMAN 39.423 % 254 1.43E-72
COOA1_HUMAN 37.778 % 188 2.04E-49
CO9A1_HUMAN 43.177 % 180 2.63E-47