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TRANSCRIPT CARD

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  1. Region 'REG00000845' > 
  2. Transcript 'KH2012:KH.S404.1.v4....' > 
  3. Clone 'citb0108' > 
  4. Transcript 'KH2012:KH.C8.248.v5....'

Transcript Model

Transcript Id

KH2012:KH.C8.248.v5.A.nonSL8-1

Possible name(s)

COL19A1; COL21A1; COL24A1

Gene model

KH2012:KH.C8.248

Location

KhC8 [5,996,820 / 6,014,942]

Sequences

Amino acid sequence

Length: 760

>KH.C8.248.v5.A.nonSL8-1
RMLGKNTRKQWKLWLVNDGDGSEQIGVNLDGANRLVELISRGNDGYVHKATFVNTDALFD
DKWHKLVMSVEEDQVSLYIDCNLVDTLPFTDRAPADVDGDTLVGRIGKNNAKSAAIELQW
MIIHCDPTRAHRESCDELPALVPEAAIGKGCPVCPAGPAGQPGPPGPPGENGIQGDPGPD
GFAGIDGLDGERGPPGPQGFQGVSGQKGEPGEIGAPGTEGLIGPAGIPGSLGLPGPAGPQ
GPPGDVNTVEGPPGRPGAPGPRGPPGLPGPSGGATAGERVVSNGEVGFVGPPGYPGPKGH
KGYKGEPGPDGKQGPKGDAGPEGEQGPAGPGGESGPRGARGYPGEDGRKGEVGPAGVPGE
MGAPGEQGLQGAEGPPGVPGERGAKGGTGDRGPLGNPGGPGLPGEPGLPGRNGADGIPGT
PGERGRPGESGPKGTEGAIGAPGNSGEQGIQGQPGERGFPGIKGHKGASGMTGAKGEPGN
DGNEGPEGNPGPQGTAGTPGERGSPGTPGENGQRGPGGPPGIIGPEGPRGQSGPRGPQGE
SGPRGVPGLQGPPGRMPSDQKILEVCRRVLRDEMRGMMAATRPRGIITGGAPGRPGPVGP
PGQQGPQGQSGLPGKTGMQGAQGVPGMPGRTGPKGFGGDKGDRGAPGIGSVGLPGPAGPP
GPQGSPGFGKDGRNGERGEPGLPGPTGYIGPQGSVGPPGYCDPSTCLMGQVRGIQQPKGP
NGQKGPDAADSPLGSEPPAGTNRRRAARTRHRPEMNDIQF

Nucleotide sequence

Length: 2,804

>KH2012:KH.C8.248.v5.A.nonSL8-1
AGAATGCTGGGAAAGAACACAAGAAAGCAATGGAAGCTTTGGCTGGTCAACGATGGAGAT
GGTTCAGAACAGATTGGAGTCAATTTGGACGGAGCCAACCGATTGGTTGAGCTAATATCA
CGTGGCAATGACGGTTACGTACACAAAGCCACGTTCGTGAACACGGACGCTTTATTTGAT
GATAAATGGCACAAACTCGTCATGTCCGTCGAGGAAGACCAAGTCTCATTGTACATTGAT
TGTAACTTGGTTGACACGCTACCCTTCACTGATCGCGCACCTGCCGATGTAGATGGTGAC
ACGTTGGTGGGGAGGATCGGGAAAAACAACGCAAAGTCTGCGGCAATTGAACTACAGTGG
ATGATAATACATTGCGACCCGACAAGAGCGCATAGGGAATCATGCGACGAACTACCTGCC
TTGGTCCCAGAAGCCGCGATTGGAAAAGGGTGCCCGGTTTGTCCAGCGGGACCTGCAGGA
CAACCAGGACCCCCAGGACCACCCGGTGAGAACGGAATCCAAGGAGATCCTGGACCAGAT
GGTTTCGCTGGAATTGATGGACTTGATGGTGAAAGAGGACCACCAGGACCCCAGGGGTTT
CAGGGAGTCTCTGGTCAAAAGGGAGAACCAGGAGAAATTGGTGCACCTGGAACAGAGGGA
CTCATTGGACCTGCAGGGATACCGGGAAGCCTTGGGTTACCTGGTCCAGCTGGCCCACAA
GGACCTCCAGGTGATGTGAACACCGTTGAGGGACCTCCTGGACGACCAGGTGCTCCTGGA
CCAAGGGGACCACCAGGACTTCCCGGACCATCTGGAGGCGCTACGGCTGGTGAAAGAGTG
GTTTCAAATGGTGAAGTTGGTTTTGTTGGACCACCAGGTTATCCCGGACCCAAGGGTCAT
AAGGGATACAAAGGTGAACCCGGTCCTGATGGAAAACAAGGTCCAAAGGGTGATGCCGGT
CCTGAGGGAGAACAAGGACCAGCTGGTCCTGGCGGTGAATCTGGTCCACGTGGGGCACGA
GGTTACCCGGGAGAAGATGGGAGAAAGGGAGAAGTAGGCCCTGCAGGAGTACCTGGAGAA
ATGGGTGCACCTGGTGAACAAGGTTTACAGGGAGCTGAAGGTCCTCCTGGAGTCCCAGGA
GAGAGGGGAGCCAAGGGAGGAACTGGGGATCGAGGTCCTCTTGGAAACCCTGGAGGACCC
GGACTTCCTGGAGAACCGGGTCTACCCGGTAGAAATGGAGCTGATGGTATCCCAGGAACC
CCAGGAGAACGGGGACGACCAGGAGAGTCAGGACCAAAAGGAACAGAAGGTGCCATAGGA
GCTCCTGGTAATTCAGGAGAACAAGGTATTCAGGGTCAACCTGGTGAACGTGGATTCCCT
GGAATCAAAGGACACAAAGGAGCATCTGGTATGACTGGCGCCAAGGGAGAACCTGGTAAT
GATGGAAATGAGGGACCAGAAGGCAACCCTGGACCACAGGGAACTGCTGGAACTCCAGGA
GAACGTGGATCACCAGGAACACCGGGTGAAAATGGGCAACGTGGGCCAGGTGGACCACCG
GGCATCATTGGACCAGAAGGACCCAGGGGCCAATCTGGGCCACGAGGACCACAAGGAGAA
TCTGGACCAAGAGGCGTCCCTGGATTACAAGGCCCTCCTGGGCGCATGCCAAGTGACCAA
AAGATTCTGGAAGTTTGCCGTAGGGTGCTTCGAGATGAGATGAGAGGTATGATGGCAGCA
ACCAGACCCCGAGGTATCATCACTGGTGGAGCTCCTGGAAGACCTGGACCTGTTGGACCA
CCTGGACAGCAAGGACCACAAGGACAATCTGGTCTTCCTGGTAAAACTGGAATGCAAGGT
GCACAGGGTGTTCCTGGAATGCCTGGACGTACTGGACCCAAAGGATTTGGTGGTGATAAA
GGTGACAGAGGAGCGCCAGGAATTGGCAGCGTTGGTCTTCCAGGACCTGCTGGTCCTCCA
GGACCCCAAGGATCACCAGGGTTTGGTAAAGATGGTCGTAACGGAGAACGTGGTGAACCC
GGCTTACCTGGACCCACAGGTTACATTGGGCCACAGGGTTCTGTTGGTCCTCCTGGTTAC
TGCGACCCATCTACTTGCTTGATGGGTCAAGTCCGTGGCATTCAACAACCTAAAGGTCCA
AATGGCCAGAAAGGTCCTGATGCAGCGGACAGCCCATTGGGCTCAGAACCACCTGCGGGC
ACAAACCGTCGCCGTGCTGCACGTACCCGCCACCGACCCGAGATGAATGATATTCAGTTT
TAACTGAAACTAAAAACTACTTTGATTACCGCGCGATCGCACCGTGTGGAGATATGACTC
AAAATTTGTAATGTAACCAATTTTATCTGCGTGCGTTATATTTTTCCATCACCGTGCTAC
AGTATATTGTTGCATCATATTAGCCGTCGTCATGTTGTCGTCACTGCTTGTTGTCAGTTT
GTTTTCCGAAGCGATTTTACATTTTATTACATTTTCACGCCTAAAAAGTGTCATGATTTA
CTGAGATGGCTGCGTTTGTACAAGAGATTGGAACTTTTTCATATAGTAGGATTTTGAAAG
ACACCTTTGGCGTACAATATCCAAATATCCGGATCGTGTTTCAAATAACTAACAACGCTT
TATGGGTGTTGTAAGGATACGAATTTGCAATTTTTGTTTACTACTAAACGGATGAGAAAA
TACAATGAAAAAGTGTCCCATTTCCCCCCACCCTACTATACAACATTTCACTAAAACTAA
AATATCTATGTTGTCCAGTGTGGTTTGGACATTAGTTATTACAA

InterProScan

SMART
Laminin_G (IPR001791) - T[1-127] 9.5E-6
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[7-132] 6.04E-19
Pfam
Collagen (IPR008160) - T[157-215] 8.4E-10 - T[497-555] 1.3E-7 - T[590-647] 4.1E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COLA1_HUMAN 39.672 % 252 1.08E-71
COOA1_HUMAN 40.123 % 191 1.53E-50
CO9A1_HUMAN 40.718 % 318 3.88E-96