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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C8.163.v4....'
  2. Transcript 'KH2012:KH.C8.248.v2....'

Transcript Model

Transcript Id

KH2012:KH.C8.248.v2.A.nonSL8-2

Possible name(s)

COL19A1; COL21A1; COL24A1

Location

KhC8 [6,005,790 / 6,014,942]

Sequences

Amino acid sequence

Length: 301

>KH.C8.248.v2.A.nonSL8-2
RMLGKNTRKQWKLWLVNDGDGSEQIGVNLDGANRLVELISRGNDGYVHKATFVNTDALFD
DKWHKLVMSVEEDQVSLYIDCNLVDTLPFTDRAPADVDGDTLVGRIGKNNAKSAAIELQW
MIIHCDPTRAHRESCDELPALVPEAAIGKGCPVCPAGPAGQPGPPGPPGENGIQGDPGPD
GFAGIDGLDGERGPPGPQGFQGVSGQKGEPGEIGAPGTEGLIGPAGIPGSLGLPGPAGPQ
GPPGDVNTVEGPPGRPGAPGPRGPPGLPGPSGGATAGERVVSNGEVGFVSSLCEMQHFIE
C

Nucleotide sequence

Length: 929

>KH2012:KH.C8.248.v2.A.nonSL8-2
AGAATGCTGGGAAAGAACACAAGAAAGCAATGGAAGCTTTGGCTGGTCAACGATGGAGAT
GGTTCAGAACAGATTGGAGTCAATTTGGACGGAGCCAACCGATTGGTTGAGCTAATATCA
CGTGGCAATGACGGTTACGTACACAAAGCCACGTTCGTGAACACGGACGCTTTATTTGAT
GATAAATGGCACAAACTCGTCATGTCCGTCGAGGAAGACCAAGTCTCATTGTACATTGAT
TGTAACTTGGTTGACACGCTACCCTTCACTGATCGCGCACCTGCCGATGTAGATGGTGAC
ACGTTGGTGGGGAGGATCGGGAAAAACAACGCAAAGTCTGCGGCAATTGAACTACAGTGG
ATGATAATACATTGCGACCCGACAAGAGCGCATAGGGAATCATGCGACGAACTACCTGCC
TTGGTCCCAGAAGCCGCGATTGGAAAAGGGTGCCCGGTTTGTCCAGCGGGACCTGCAGGA
CAACCAGGACCCCCAGGACCACCCGGTGAGAACGGAATCCAAGGAGATCCTGGACCAGAT
GGTTTCGCTGGAATTGATGGACTTGATGGTGAAAGAGGACCACCAGGACCCCAGGGGTTT
CAGGGAGTCTCTGGTCAAAAGGGAGAACCAGGAGAAATTGGTGCACCTGGAACAGAGGGA
CTCATTGGACCTGCAGGGATACCGGGAAGCCTTGGGTTACCTGGTCCAGCTGGCCCACAA
GGACCTCCAGGTGATGTGAACACCGTTGAGGGACCTCCTGGACGACCAGGTGCTCCTGGA
CCAAGGGGACCACCAGGACTTCCCGGACCATCTGGAGGCGCTACGGCTGGTGAAAGAGTG
GTTTCAAATGGTGAAGTTGGTTTTGTAAGTTCTTTGTGTGAAATGCAACATTTTATCGAG
TGTTAATACCTGCTTTTTATGGCAACCAC

InterProScan

SMART
Laminin_G (IPR001791) - T[1-127] 9.5E-6
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[7-132] 9.68E-20
Pfam
Collagen (IPR008160) - T[157-211] 8.1E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COLA1_HUMAN 34.014 % 127 8.71E-33
CO9A1_HUMAN 42.742 % 157 3.32E-43
COJA1_HUMAN 32.566 % 126 1.53E-32