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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C14.538.v1...'
  2. Transcript 'KH2012:KH.C8.248.v2....'

Transcript Model

Transcript Id

KH2012:KH.C8.248.v2.A.ND1-2

Possible name(s)

COL19A1; COL21A1; COL24A1

Location

KhC8 [6,005,790 / 6,014,996]

Sequences

Amino acid sequence

Length: 319

>KH.C8.248.v2.A.ND1-2
RNVYPMGLPSEYSFVSTFRMLGKNTRKQWKLWLVNDGDGSEQIGVNLDGANRLVELISRG
NDGYVHKATFVNTDALFDDKWHKLVMSVEEDQVSLYIDCNLVDTLPFTDRAPADVDGDTL
VGRIGKNNAKSAAIELQWMIIHCDPTRAHRESCDELPALVPEAAIGKGCPVCPAGPAGQP
GPPGPPGENGIQGDPGPDGFAGIDGLDGERGPPGPQGFQGVSGQKGEPGEIGAPGTEGLI
GPAGIPGSLGLPGPAGPQGPPGDVNTVEGPPGRPGAPGPRGPPGLPGPSGGATAGERVVS
NGEVGFVSSLCEMQHFIEC

Nucleotide sequence

Length: 983

>KH2012:KH.C8.248.v2.A.ND1-2
AGGAATGTGTACCCAATGGGACTTCCAAGCGAATATTCTTTCGTAAGCACCTTTAGAATG
CTGGGAAAGAACACAAGAAAGCAATGGAAGCTTTGGCTGGTCAACGATGGAGATGGTTCA
GAACAGATTGGAGTCAATTTGGACGGAGCCAACCGATTGGTTGAGCTAATATCACGTGGC
AATGACGGTTACGTACACAAAGCCACGTTCGTGAACACGGACGCTTTATTTGATGATAAA
TGGCACAAACTCGTCATGTCCGTCGAGGAAGACCAAGTCTCATTGTACATTGATTGTAAC
TTGGTTGACACGCTACCCTTCACTGATCGCGCACCTGCCGATGTAGATGGTGACACGTTG
GTGGGGAGGATCGGGAAAAACAACGCAAAGTCTGCGGCAATTGAACTACAGTGGATGATA
ATACATTGCGACCCGACAAGAGCGCATAGGGAATCATGCGACGAACTACCTGCCTTGGTC
CCAGAAGCCGCGATTGGAAAAGGGTGCCCGGTTTGTCCAGCGGGACCTGCAGGACAACCA
GGACCCCCAGGACCACCCGGTGAGAACGGAATCCAAGGAGATCCTGGACCAGATGGTTTC
GCTGGAATTGATGGACTTGATGGTGAAAGAGGACCACCAGGACCCCAGGGGTTTCAGGGA
GTCTCTGGTCAAAAGGGAGAACCAGGAGAAATTGGTGCACCTGGAACAGAGGGACTCATT
GGACCTGCAGGGATACCGGGAAGCCTTGGGTTACCTGGTCCAGCTGGCCCACAAGGACCT
CCAGGTGATGTGAACACCGTTGAGGGACCTCCTGGACGACCAGGTGCTCCTGGACCAAGG
GGACCACCAGGACTTCCCGGACCATCTGGAGGCGCTACGGCTGGTGAAAGAGTGGTTTCA
AATGGTGAAGTTGGTTTTGTAAGTTCTTTGTGTGAAATGCAACATTTTATCGAGTGTTAA
TACCTGCTTTTTATGGCAACCAC

InterProScan

SMART
Laminin_G (IPR001791) - T[1-145] 1.7E-18
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[2-150] 1.67E-23
Pfam
Collagen (IPR008160) - T[175-229] 9.5E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COMA1_HUMAN 33.333 % 151 9.08E-41
CO9A1_HUMAN 44.737 % 187 1.29E-53
COJA1_HUMAN 32.399 % 146 3.47E-39