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TRANSCRIPT CARD

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  1. Region 'REG00000884'
  2. Transcript 'KH2012:KH.C2.10.v1.A...'
  3. Transcript 'KH2012:KH.L149.21.v1...'
  4. Transcript 'KH2012:KH.C8.192.v2....'

Transcript Model

Transcript Id

KH2012:KH.C8.192.v2.A.ND3-2

Possible name(s)

GRWD1; RBBP4; RBBP7

Location

KhC8 [895,173 / 899,899]

Sequences

Amino acid sequence

Length: 438

>KH.C8.192.v2.A.ND3-2
IKVKIIEMGEKDGAYDDSVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDV
TKPEGKDYTVHRLILGTHTSDEQNHLIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSG
KIEIEIKINHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPSKPDPCGDCNPDLRL
RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDVGATPREGRILDAQHIYTGHTAVVEDV
SWHLLHESLFGSVADDQKLMIWDTRSAACNKPSHVVDAHTAEVNCLSFNPYSEFILATGS
ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEE
QSAEDAEDGPPELLFVHGGHTAKISDFSWNPNEPWVSCSVSEDNIMQVWQMAENIYNDEE
QDTAGSSTPAAELEQNAT

Nucleotide sequence

Length: 1,890

>KH2012:KH.C8.192.v2.A.ND3-2
CTGGGAATGATTTTCGAAACTGTCGGTATATTAAATCGTCTTCCTTTGATAATTGAAGCA
AGAACTTACGTCATTTGTGTATGATTGCGAATTCGTATCCATTTTTCATGAGAACGTAAA
CGAAATAGCAAAGATAACAACAAAGACTAAAAATCTTGAAAAACTAAAACGAAATTGTAT
GCTTTGGAAACACTACGTGCCACTTGCGGGAAACAGTATTGAAGCAAAATCGAAGAGGAA
AGGAAAAGGCTGTGTCGCTACAGTGAAGGTGTGTACTGGTTGAATTAAAGTTAAAATAAT
AGAAATGGGAGAAAAAGACGGAGCGTATGATGATTCTGTTGAAGAACGTGTCATCAATGA
AGAATACAAGATATGGAAGAAAAATACACCATTTCTGTATGATCTTGTCATGACCCATGC
TTTAGAATGGCCCAGTCTTACTTGCCAATGGCTTCCTGATGTGACCAAACCTGAGGGGAA
AGATTACACAGTTCATCGTTTGATTCTGGGCACCCATACTTCTGATGAACAGAATCATTT
GATCATCGCGAGTGTTCAACTTCCAACTGACGATGCTCAGTTTGACGCCTCACATTATGA
CAGCGAGCGTGGGGAGTTTGGCGGCTTTGGTTCTGTCAGTGGAAAGATTGAAATTGAAAT
TAAAATCAACCATGAGGGAGAAGTAAACAGGGCCAGGTTCATGCCTCAGAATCCATGCAT
CATTGGAACAAAGACTCCATCCAGCGATGTGTTGGTGTTTGACTACACAAAGCATCCTAG
CAAACCAGATCCATGCGGAGACTGCAATCCTGATTTGCGTCTGCGTGGTCACCAGAAGGA
AGGGTATGGCCTTTCTTGGAATCCAAATCTAAGCGGCCATTTGTTAAGTGCATCTGATGA
TCATACCATTTGTTTATGGGATGTTGGTGCCACACCACGTGAAGGGAGAATTCTGGATGC
TCAACATATTTACACAGGTCATACAGCTGTAGTTGAAGACGTATCTTGGCATTTATTGCA
TGAAAGTTTGTTCGGTTCAGTTGCTGATGACCAAAAATTGATGATTTGGGATACACGTTC
TGCTGCTTGTAACAAACCAAGTCATGTTGTTGATGCACACACCGCTGAAGTAAACTGCCT
TTCCTTCAACCCATACAGTGAGTTCATTCTAGCAACAGGTTCTGCCGACAAAACGGTTGC
TTTGTGGGATTTACGGAACCTCAAACTTAAGTTACATTCGTTTGAGTCTCACAAAGATGA
AATTTTCCAGGTACAATGGTCTCCACATAATGAAACCATCTTGGCTTCAAGTGGAACTGA
TCGGAGGTTAAATGTCTGGGATCTGAGTAAGATCGGGGAAGAGCAGAGTGCTGAAGATGC
AGAAGATGGTCCTCCTGAACTCCTTTTCGTACATGGAGGACACACAGCAAAGATTTCAGA
CTTTTCTTGGAATCCCAACGAGCCTTGGGTGTCTTGCTCTGTTTCTGAGGATAACATTAT
GCAAGTATGGCAGATGGCTGAAAACATCTACAACGATGAAGAACAAGATACAGCCGGGTC
TTCTACTCCCGCTGCAGAGTTAGAGCAAAATGCTACCTGAAATAATCATCTAAAAAACAA
AACAGTTCAAAAACGGTCTGAAATAGATTTGTAATCTTGGTTTCTTTTGTATTGGTTAAT
AATATGTGTCCCAAGGTTATATATTGAGGTAAATTTATTTCAGACTGGTTGTAATACCAA
ATACGTATACATGATACCTTTTTATAATTGGAAAATCATTTTGTTGTGATAAGTATAAAT
GGAAATTTTTCGATGAATTCAGTCGTATTTTTTACTTGTAAGGGTTTACCATTGGTTGTA
CATATGTAATAAACTATTAAGCATACAACT

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[9-428] 1.4E-166
Pfam
Histone-bd_RBBP4_N (IPR022052) - T[26-94] 3.9E-29
SMART
WD40_repeat (IPR001680) - T[119-160] 34.0 - T[173-213] 3.3E-6 - T[223-263] 0.072 - T[269-309] 1.6E-8 - T[313-353] 7.0E-7 - T[370-410] 0.016
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[121-416] 7.69E-49
ProSiteProfiles
WD40_repeat (IPR001680) - T[180-214] 11.945 - T[230-272] 9.071 - T[276-312] 13.85 - T[320-362] 12.948
Pfam
WD40_repeat (IPR001680) - T[180-213] 0.043 - T[227-263] 0.012 - T[271-309] 3.6E-7 - T[317-353] 3.6E-4 - T[374-409] 0.002
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[180-419] 34.328
ProSitePatterns
WD40_repeat_CS (IPR019775) - T[200-214] . - T[296-310] . - T[340-354] .
PRINTS
G-protein_beta_WD-40_rep (IPR020472) - T[200-214] 1.6E-8 - T[296-310] 1.6E-8 - T[340-354] 1.6E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GRWD1_HUMAN 29.085 % 122 1.85E-30
RBBP7_HUMAN 86.893 % 766 0
RBBP4_HUMAN 89.176 % 802 0