- Region 'REG00000884' >
- Transcript 'KH2012:KH.C2.10.v1.A...' >
- Transcript 'KH2012:KH.L149.21.v1...' >
- Transcript 'KH2012:KH.C8.192.v2....'
Transcript Model
Transcript Id
KH2012:KH.C8.192.v2.A.ND3-2
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
KhC8 [895,173 / 899,899]
Amino acid sequence
Length: 438
>KH.C8.192.v2.A.ND3-2
IKVKIIEMGEKDGAYDDSVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDV
TKPEGKDYTVHRLILGTHTSDEQNHLIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSG
KIEIEIKINHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPSKPDPCGDCNPDLRL
RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDVGATPREGRILDAQHIYTGHTAVVEDV
SWHLLHESLFGSVADDQKLMIWDTRSAACNKPSHVVDAHTAEVNCLSFNPYSEFILATGS
ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEE
QSAEDAEDGPPELLFVHGGHTAKISDFSWNPNEPWVSCSVSEDNIMQVWQMAENIYNDEE
QDTAGSSTPAAELEQNAT
Nucleotide sequence
Length: 1,890
>KH2012:KH.C8.192.v2.A.ND3-2
CTGGGAATGATTTTCGAAACTGTCGGTATATTAAATCGTCTTCCTTTGATAATTGAAGCA
AGAACTTACGTCATTTGTGTATGATTGCGAATTCGTATCCATTTTTCATGAGAACGTAAA
CGAAATAGCAAAGATAACAACAAAGACTAAAAATCTTGAAAAACTAAAACGAAATTGTAT
GCTTTGGAAACACTACGTGCCACTTGCGGGAAACAGTATTGAAGCAAAATCGAAGAGGAA
AGGAAAAGGCTGTGTCGCTACAGTGAAGGTGTGTACTGGTTGAATTAAAGTTAAAATAAT
AGAAATGGGAGAAAAAGACGGAGCGTATGATGATTCTGTTGAAGAACGTGTCATCAATGA
AGAATACAAGATATGGAAGAAAAATACACCATTTCTGTATGATCTTGTCATGACCCATGC
TTTAGAATGGCCCAGTCTTACTTGCCAATGGCTTCCTGATGTGACCAAACCTGAGGGGAA
AGATTACACAGTTCATCGTTTGATTCTGGGCACCCATACTTCTGATGAACAGAATCATTT
GATCATCGCGAGTGTTCAACTTCCAACTGACGATGCTCAGTTTGACGCCTCACATTATGA
CAGCGAGCGTGGGGAGTTTGGCGGCTTTGGTTCTGTCAGTGGAAAGATTGAAATTGAAAT
TAAAATCAACCATGAGGGAGAAGTAAACAGGGCCAGGTTCATGCCTCAGAATCCATGCAT
CATTGGAACAAAGACTCCATCCAGCGATGTGTTGGTGTTTGACTACACAAAGCATCCTAG
CAAACCAGATCCATGCGGAGACTGCAATCCTGATTTGCGTCTGCGTGGTCACCAGAAGGA
AGGGTATGGCCTTTCTTGGAATCCAAATCTAAGCGGCCATTTGTTAAGTGCATCTGATGA
TCATACCATTTGTTTATGGGATGTTGGTGCCACACCACGTGAAGGGAGAATTCTGGATGC
TCAACATATTTACACAGGTCATACAGCTGTAGTTGAAGACGTATCTTGGCATTTATTGCA
TGAAAGTTTGTTCGGTTCAGTTGCTGATGACCAAAAATTGATGATTTGGGATACACGTTC
TGCTGCTTGTAACAAACCAAGTCATGTTGTTGATGCACACACCGCTGAAGTAAACTGCCT
TTCCTTCAACCCATACAGTGAGTTCATTCTAGCAACAGGTTCTGCCGACAAAACGGTTGC
TTTGTGGGATTTACGGAACCTCAAACTTAAGTTACATTCGTTTGAGTCTCACAAAGATGA
AATTTTCCAGGTACAATGGTCTCCACATAATGAAACCATCTTGGCTTCAAGTGGAACTGA
TCGGAGGTTAAATGTCTGGGATCTGAGTAAGATCGGGGAAGAGCAGAGTGCTGAAGATGC
AGAAGATGGTCCTCCTGAACTCCTTTTCGTACATGGAGGACACACAGCAAAGATTTCAGA
CTTTTCTTGGAATCCCAACGAGCCTTGGGTGTCTTGCTCTGTTTCTGAGGATAACATTAT
GCAAGTATGGCAGATGGCTGAAAACATCTACAACGATGAAGAACAAGATACAGCCGGGTC
TTCTACTCCCGCTGCAGAGTTAGAGCAAAATGCTACCTGAAATAATCATCTAAAAAACAA
AACAGTTCAAAAACGGTCTGAAATAGATTTGTAATCTTGGTTTCTTTTGTATTGGTTAAT
AATATGTGTCCCAAGGTTATATATTGAGGTAAATTTATTTCAGACTGGTTGTAATACCAA
ATACGTATACATGATACCTTTTTATAATTGGAAAATCATTTTGTTGTGATAAGTATAAAT
GGAAATTTTTCGATGAATTCAGTCGTATTTTTTACTTGTAAGGGTTTACCATTGGTTGTA
CATATGTAATAAACTATTAAGCATACAACT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[9-428] 1.4E-166 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[26-94] 3.9E-29 |
| SMART |
WD40_repeat (IPR001680) - T[119-160] 34.0 - T[173-213] 3.3E-6 - T[223-263] 0.072 - T[269-309] 1.6E-8 - T[313-353] 7.0E-7 - T[370-410] 0.016 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[121-416] 7.69E-49 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[180-214] 11.945 - T[230-272] 9.071 - T[276-312] 13.85 - T[320-362] 12.948 |
| Pfam |
WD40_repeat (IPR001680) - T[180-213] 0.043 - T[227-263] 0.012 - T[271-309] 3.6E-7 - T[317-353] 3.6E-4 - T[374-409] 0.002 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[180-419] 34.328 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[200-214] . - T[296-310] . - T[340-354] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[200-214] 1.6E-8 - T[296-310] 1.6E-8 - T[340-354] 1.6E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 29.085 % | 122 | 1.85E-30 |
| RBBP7_HUMAN | 86.893 % | 766 | 0 |
| RBBP4_HUMAN | 89.176 % | 802 | 0 |