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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C9.287.v4....'
  2. Transcript 'Moocul.CG.ELv1_2.S61...'
  3. Transcript 'KH2012:KH.L18.5.v1.A...'
  4. Transcript 'KH2012:KH.L18.5.v1.A...'
  5. Transcript 'KH2012:KH.C8.143.v5....'

Transcript Model

Transcript Id

KH2012:KH.C8.143.v5.A.SL3-1

Possible name(s)

PPARA; PPARD; PPARG

Location

KhC8 [4,433,334 / 4,439,993]

Sequences

Amino acid sequence

Length: 620

>KH.C8.143.v5.A.SL3-1
NLSLTKADIISLLLHIYFVNMSEEKCDKVDADVSPDCVKTECPKVLAPLRKKRPSTKLLV
KSTDLNILCKVCGDKASGFHYGVHACEGCKGFFRRTIRLKIEYETCVQSCKVDLKSRNKC
QFCRFKKCVGLGMSRDAIRFGRMPRHEKQQIIQEIEKKSNKTGSTSGNVLGYQKLITEIS
ESFLQHISLTQERVNACWESRKALGDKAKTLHTFHDIPACFPNLSTYYAQFKSFTTQDDG
KPMAPEMTLSDHLKSFLNSTNRNKSNVSNNGQSKPVMEPAPDIQSSELTSSSPTDQLNSR
PSTSSTPSLSSQQHSFELKGILDFISMPPNSSSQRDPFHGTMQNSTANGSLNKPSKCDDK
LEKEPRLKETPTNASTAFQTMKNLSNIKTFQSMYETICSPSGESFKLLLEQNPGFLEGMD
PTKLVSPCDEMLTPDLKARLLFASQVFKKNIGKDKPTIYKNVIGSKIVQILYSDFQARVV
NGICELTEFAKRLPNFHDISLQDQVILLKYGSYETMFVLFSRLIYGEGMILPKSNIYVTF
NFVYQLGVAGDIMKSKFLFAKKMLALELTDDEMALFVAMIILCPDRPEINDRKLVERIQE
KVLFALEYQLSISHPHKPRS

Nucleotide sequence

Length: 2,187

>KH2012:KH.C8.143.v5.A.SL3-1
TTTCATATATTATCATTAAGTATGTATTCGCCGGATATCGGTAGAAAACCTTGTTCAAGT
TGGTGTTGAGAAGTATAAAATTTATCATTGACCAAAGCGGATATTATTAGTTTATTACTA
CATATCTATTTTGTTAATATGAGTGAGGAAAAATGTGATAAGGTTGACGCCGATGTTTCT
CCCGATTGTGTTAAAACCGAATGCCCCAAAGTGCTTGCACCATTACGAAAAAAGCGACCT
TCTACAAAGCTATTGGTGAAGTCAACGGATTTGAATATACTATGCAAAGTTTGTGGAGAT
AAAGCGTCTGGATTTCACTATGGTGTCCATGCATGTGAAGGGTGCAAGGGATTTTTTCGA
CGGACCATTCGACTCAAAATTGAATACGAAACTTGTGTGCAGTCATGCAAAGTCGATCTT
AAAAGTCGGAACAAATGTCAATTCTGTCGATTTAAGAAATGTGTTGGACTTGGAATGTCG
CGTGATGCAATTAGATTTGGCCGAATGCCCAGACATGAGAAGCAACAAATTATTCAAGAA
ATAGAAAAAAAATCTAACAAGACTGGCTCCACCTCGGGAAATGTACTTGGCTATCAAAAG
CTAATCACAGAAATATCGGAATCGTTTTTGCAACATATTTCACTCACGCAAGAGCGAGTA
AATGCATGTTGGGAGTCGAGAAAAGCACTTGGAGATAAAGCAAAAACATTACACACATTT
CATGACATTCCTGCGTGTTTCCCGAATTTGTCGACATATTATGCCCAGTTTAAATCATTT
ACCACGCAAGATGACGGGAAACCCATGGCTCCTGAAATGACTCTAAGTGACCATTTGAAA
AGCTTCTTAAATTCCACCAACCGAAATAAATCAAATGTTTCTAACAATGGCCAAAGCAAA
CCGGTTATGGAACCAGCACCAGACATCCAATCATCTGAACTTACCAGTTCAAGTCCCACT
GATCAGTTAAATTCAAGACCAAGCACTTCTTCAACCCCCAGCCTAAGCTCACAGCAACAT
AGTTTTGAACTAAAAGGAATTTTGGATTTTATCTCCATGCCTCCAAATAGTAGTTCACAG
CGAGATCCTTTCCACGGTACAATGCAAAATTCAACAGCCAATGGGTCTTTAAACAAGCCA
AGCAAATGCGACGACAAATTGGAAAAGGAACCCAGATTAAAAGAAACTCCAACTAATGCA
TCAACTGCCTTTCAAACTATGAAGAATTTAAGCAACATCAAAACTTTTCAATCTATGTAT
GAAACAATATGTTCCCCCTCTGGTGAGTCGTTCAAATTATTACTTGAACAAAATCCTGGG
TTTTTGGAAGGCATGGACCCGACCAAACTGGTTTCTCCATGTGATGAAATGCTCACTCCT
GATCTTAAAGCGAGACTCCTGTTTGCATCACAAGTTTTTAAAAAAAATATTGGAAAAGAT
AAGCCAACGATCTATAAAAATGTTATTGGAAGCAAAATAGTGCAGATTCTTTACAGTGAT
TTTCAAGCAAGGGTTGTCAATGGAATATGCGAGCTTACTGAGTTTGCCAAGCGCCTTCCA
AATTTCCATGATATATCTCTTCAAGATCAGGTAATTCTATTAAAGTATGGAAGCTATGAG
ACCATGTTTGTACTCTTCAGTCGATTAATTTATGGAGAAGGCATGATTTTACCCAAGTCC
AACATATACGTCACATTCAACTTTGTGTATCAACTTGGTGTTGCTGGAGACATAATGAAA
TCGAAATTCTTATTTGCCAAGAAGATGTTGGCACTAGAACTAACAGACGATGAAATGGCT
CTCTTTGTTGCTATGATTATTCTCTGTCCAGATCGACCCGAAATCAACGACCGCAAATTG
GTAGAGCGAATACAGGAAAAAGTTTTATTTGCATTGGAATATCAGCTCTCTATATCTCAC
CCTCACAAACCAAGGTCTTAATAAATAGGGTGGGGGAAGACGGAACATCCTTTTATTTTA
TTTTCTTATTTTATTTGGTAGTAAACAAATGTGTCCCGTCTTCCCCACCCCACTATAAGA
ATACTTCAAACCAAAAGAACATATGCAGGGATAAAACAGCATTTGTTAAAACATACTTAC
AGTTAAAAAATATTTACATTTAATGTTTAATTATTTTGAAGATAAGCTACTAATAGAAGC
AAAAGTATATAATATATAATTTTTCAT

InterProScan

ProSiteProfiles
Znf_hrmn_rcpt (IPR001628) - T[66-140] 17.525
Gene3D
Znf_NHR/GATA (IPR013088) - T[66-159] 3.7E-33
SMART
Znf_hrmn_rcpt (IPR001628) - T[66-136] 2.6E-33
Pfam
Znf_hrmn_rcpt (IPR001628) - T[68-135] 3.1E-26
ProSitePatterns
Znf_hrmn_rcpt (IPR001628) - T[69-95] .
PRINTS
Znf_hrmn_rcpt (IPR001628) - T[69-85] 1.0E-17 - T[85-100] 1.0E-17 - T[117-125] 1.0E-17 - T[125-133] 1.0E-17
PRINTS
Nuclear_hrmn_rcpt (IPR001723) - T[129-139] 7.8E-15 - T[478-499] 7.8E-15 - T[499-515] 7.8E-15 - T[566-581] 7.8E-15
SUPERFAMILY
NHR_like_dom_sf (IPR035500) - T[461-619] 1.97E-43
PRINTS
ThyrH_rcpt (IPR001728) - T[475-496] 2.5E-6 - T[501-520] 2.5E-6 - T[566-588] 2.5E-6
SMART
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[477-620] 1.3E-8
Pfam
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[485-609] 6.2E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PPARG_HUMAN 51.515 % 159 3.62E-42
PPARD_HUMAN 42.328 % 162 6.61E-44
PPARA_HUMAN 69.149 % 153 1.8E-40