Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 609

>KH.C8.143.v5.A.SL1-1
LLLHIYFVNMSEEKCDKVDADVSPDCVKTECPKVLAPLRKKRPSTKLLVKSTDLNILCKV
CGDKASGFHYGVHACEGCKGFFRRTIRLKIEYETCVQSCKVDLKSRNKCQFCRFKKCVGL
GMSRDAIRFGRMPRHEKQQIIQEIEKKSNKTGSTSGNVLGYQKLITEISESFLQHISLTQ
ERVNACWESRKALGDKAKTLHTFHDIPACFPNLSTYYAQFKSFTTQDDGKPMAPEMTLSD
HLKSFLNSTNRNKSNVSNNGQSKPVMEPAPDIQSSELTSSSPTDQLNSRPSTSSTPSLSS
QQHSFELKGILDFISMPPNSSSQRDPFHGTMQNSTANGSLNKPSKCDDKLEKEPRLKETP
TNASTAFQTMKNLSNIKTFQSMYETICSPSGESFKLLLEQNPGFLEGMDPTKLVSPCDEM
LTPDLKARLLFASQVFKKNIGKDKPTIYKNVIGSKIVQILYSDFQARVVNGICELTEFAK
RLPNFHDISLQDQVILLKYGSYETMFVLFSRLIYGEGMILPKSNIYVTFNFVYQLGVAGD
IMKSKFLFAKKMLALELTDDEMALFVAMIILCPDRPEINDRKLVERIQEKVLFALEYQLS
ISHPHKPRS

Nucleotide sequence

Length: 2,077

>KH2012:KH.C8.143.v5.A.SL1-1
TTTATTACTACATATCTATTTTGTTAATATGAGTGAGGAAAAATGTGATAAGGTTGACGC
CGATGTTTCTCCCGATTGTGTTAAAACCGAATGCCCCAAAGTGCTTGCACCATTACGAAA
AAAGCGACCTTCTACAAAGCTATTGGTGAAGTCAACGGATTTGAATATACTATGCAAAGT
TTGTGGAGATAAAGCGTCTGGATTTCACTATGGTGTCCATGCATGTGAAGGGTGCAAGGG
ATTTTTTCGACGGACCATTCGACTCAAAATTGAATACGAAACTTGTGTGCAGTCATGCAA
AGTCGATCTTAAAAGTCGGAACAAATGTCAATTCTGTCGATTTAAGAAATGTGTTGGACT
TGGAATGTCGCGTGATGCAATTAGATTTGGCCGAATGCCCAGACATGAGAAGCAACAAAT
TATTCAAGAAATAGAAAAAAAATCTAACAAGACTGGCTCCACCTCGGGAAATGTACTTGG
CTATCAAAAGCTAATCACAGAAATATCGGAATCGTTTTTGCAACATATTTCACTCACGCA
AGAGCGAGTAAATGCATGTTGGGAGTCGAGAAAAGCACTTGGAGATAAAGCAAAAACATT
ACACACATTTCATGACATTCCTGCGTGTTTCCCGAATTTGTCGACATATTATGCCCAGTT
TAAATCATTTACCACGCAAGATGACGGGAAACCCATGGCTCCTGAAATGACTCTAAGTGA
CCATTTGAAAAGCTTCTTAAATTCCACCAACCGAAATAAATCAAATGTTTCTAACAATGG
CCAAAGCAAACCGGTTATGGAACCAGCACCAGACATCCAATCATCTGAACTTACCAGTTC
AAGTCCCACTGATCAGTTAAATTCAAGACCAAGCACTTCTTCAACCCCCAGCCTAAGCTC
ACAGCAACATAGTTTTGAACTAAAAGGAATTTTGGATTTTATCTCCATGCCTCCAAATAG
TAGTTCACAGCGAGATCCTTTCCACGGTACAATGCAAAATTCAACAGCCAATGGGTCTTT
AAACAAGCCAAGCAAATGCGACGACAAATTGGAAAAGGAACCCAGATTAAAAGAAACTCC
AACTAATGCATCAACTGCCTTTCAAACTATGAAGAATTTAAGCAACATCAAAACTTTTCA
ATCTATGTATGAAACAATATGTTCCCCCTCTGGTGAGTCGTTCAAATTATTACTTGAACA
AAATCCTGGGTTTTTGGAAGGCATGGACCCGACCAAACTGGTTTCTCCATGTGATGAAAT
GCTCACTCCTGATCTTAAAGCGAGACTCCTGTTTGCATCACAAGTTTTTAAAAAAAATAT
TGGAAAAGATAAGCCAACGATCTATAAAAATGTTATTGGAAGCAAAATAGTGCAGATTCT
TTACAGTGATTTTCAAGCAAGGGTTGTCAATGGAATATGCGAGCTTACTGAGTTTGCCAA
GCGCCTTCCAAATTTCCATGATATATCTCTTCAAGATCAGGTAATTCTATTAAAGTATGG
AAGCTATGAGACCATGTTTGTACTCTTCAGTCGATTAATTTATGGAGAAGGCATGATTTT
ACCCAAGTCCAACATATACGTCACATTCAACTTTGTGTATCAACTTGGTGTTGCTGGAGA
CATAATGAAATCGAAATTCTTATTTGCCAAGAAGATGTTGGCACTAGAACTAACAGACGA
TGAAATGGCTCTCTTTGTTGCTATGATTATTCTCTGTCCAGATCGACCCGAAATCAACGA
CCGCAAATTGGTAGAGCGAATACAGGAAAAAGTTTTATTTGCATTGGAATATCAGCTCTC
TATATCTCACCCTCACAAACCAAGGTCTTAATAAATAGGGTGGGGGAAGACGGAACATCC
TTTTATTTTATTTTCTTATTTTATTTGGTAGTAAACAAATGTGTCCCGTCTTCCCCACCC
CACTATAAGAATACTTCAAACCAAAAGAACATATGCAGGGATAAAACAGCATTTGTTAAA
ACATACTTACAGTTAAAAAATATTTACATTTAATGTTTAATTATTTTGAAGATAAGCTAC
TAATAGAAGCAAAAGTATATAATATATAATTTTTCAT

InterProScan

SMART	Znf_hrmn_rcpt (IPR001628) - T[55-125] 2.6E-33
ProSiteProfiles	Znf_hrmn_rcpt (IPR001628) - T[55-129] 17.525
Gene3D	Znf_NHR/GATA (IPR013088) - T[55-148] 3.6E-33
Pfam	Znf_hrmn_rcpt (IPR001628) - T[57-124] 3.0E-26
ProSitePatterns	Znf_hrmn_rcpt (IPR001628) - T[58-84] .
PRINTS	Znf_hrmn_rcpt (IPR001628) - T[58-74] 9.7E-18 - T[74-89] 9.7E-18 - T[106-114] 9.7E-18 - T[114-122] 9.7E-18
PRINTS	Nuclear_hrmn_rcpt (IPR001723) - T[118-128] 7.3E-15 - T[467-488] 7.3E-15 - T[488-504] 7.3E-15 - T[555-570] 7.3E-15
SUPERFAMILY	NHR_like_dom_sf (IPR035500) - T[450-608] 1.97E-43
PRINTS	ThyrH_rcpt (IPR001728) - T[464-485] 2.4E-6 - T[490-509] 2.4E-6 - T[555-577] 2.4E-6
SMART	Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[466-609] 1.3E-8
Pfam	Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[474-598] 6.0E-9