- Transcript 'KH2012:KH.C8.143.v4....'
Transcript Model
Transcript Id
KH2012:KH.C8.143.v4.A.SL4-2
Possible name(s)
PPARA; PPARD; PPARG
Gene model
Location
KhC8 [4,433,477 / 4,441,979]
Amino acid sequence
Length: 642
>KH.C8.143.v4.A.SL4-2
EEKCDKVDADVSPDCVKTECPKVLAPLRKKRPSTKLLVKSTDLNILCKVCGDKASGFHYG
VHACEGCKGFFRRTIRLKIEYETCVQSCKVDLKSRNKCQFCRFKKCVGLGMSRDAIRFGR
MPRHEKQQIIQEIEKKSNKTGSTSGNVLGYQKLITEISESFLQHISLTQERVNACWESRK
ALGDKAKTLHTFHDIPACFPNLSTYYAQFKSFTTQDDGKPMAPEMTLSDHLKSFLNSTNR
NKSNVSNNGQSKPVMEPAPDIQSSELTSSSPTDQLNSRPSTSSTPSLSSQQHSFELKGIL
DFISMPPNSSSQRDPFHGTMQNSTANGSLNKPSKCDDKLEKEPRLKETPTNASTAFQTMK
NLSNIKTFQSMYETICSPSGESFKLLLEQNPGFLEGMDPTKLVSPCDEMLTPDLKARLLF
ASQVFKKNIGKDKPTIYKNVIGSKIVQILYSDFQARVVNGICELTEFAKRLPNFHDISLQ
DQVILLKYGSYETMFVLFSRLIYGEGMILPKSNIYVTFNFVYQLGVAGDIMKSKFLFAKK
MLALELTDDEMALFVAMIILCPDRPEINDRKLVERIQEKVLFALEYQLSISHPHKPRLFA
HLLLKMAELRELVSKHVVMVQKLADAKDFVPPLLCEIMQDMK
Nucleotide sequence
Length: 2,572
>KH2012:KH.C8.143.v4.A.SL4-2
TGAGGAAAAATGTGATAAGGTTGACGCCGATGTTTCTCCCGATTGTGTTAAAACCGAATG
CCCCAAAGTGCTTGCACCATTACGAAAAAAGCGACCTTCTACAAAGCTATTGGTGAAGTC
AACGGATTTGAATATACTATGCAAAGTTTGTGGAGATAAAGCGTCTGGATTTCACTATGG
TGTCCATGCATGTGAAGGGTGCAAGGGATTTTTTCGACGGACCATTCGACTCAAAATTGA
ATACGAAACTTGTGTGCAGTCATGCAAAGTCGATCTTAAAAGTCGGAACAAATGTCAATT
CTGTCGATTTAAGAAATGTGTTGGACTTGGAATGTCGCGTGATGCAATTAGATTTGGCCG
AATGCCCAGACATGAGAAGCAACAAATTATTCAAGAAATAGAAAAAAAATCTAACAAGAC
TGGCTCCACCTCGGGAAATGTACTTGGCTATCAAAAGCTAATCACAGAAATATCGGAATC
GTTTTTGCAACATATTTCACTCACGCAAGAGCGAGTAAATGCATGTTGGGAGTCGAGAAA
AGCACTTGGAGATAAAGCAAAAACATTACACACATTTCATGACATTCCTGCGTGTTTCCC
GAATTTGTCGACATATTATGCCCAGTTTAAATCATTTACCACGCAAGATGACGGGAAACC
CATGGCTCCTGAAATGACTCTAAGTGACCATTTGAAAAGCTTCTTAAATTCCACCAACCG
AAATAAATCAAATGTTTCTAACAATGGCCAAAGCAAACCGGTTATGGAACCAGCACCAGA
CATCCAATCATCTGAACTTACCAGTTCAAGTCCCACTGATCAGTTAAATTCAAGACCAAG
CACTTCTTCAACCCCCAGCCTAAGCTCACAGCAACATAGTTTTGAACTAAAAGGAATTTT
GGATTTTATCTCCATGCCTCCAAATAGTAGTTCACAGCGAGATCCTTTCCACGGTACAAT
GCAAAATTCAACAGCCAATGGGTCTTTAAACAAGCCAAGCAAATGCGACGACAAATTGGA
AAAGGAACCCAGATTAAAAGAAACTCCAACTAATGCATCAACTGCCTTTCAAACTATGAA
GAATTTAAGCAACATCAAAACTTTTCAATCTATGTATGAAACAATATGTTCCCCCTCTGG
TGAGTCGTTCAAATTATTACTTGAACAAAATCCTGGGTTTTTGGAAGGCATGGACCCGAC
CAAACTGGTTTCTCCATGTGATGAAATGCTCACTCCTGATCTTAAAGCGAGACTCCTGTT
TGCATCACAAGTTTTTAAAAAAAATATTGGAAAAGATAAGCCAACGATCTATAAAAATGT
TATTGGAAGCAAAATAGTGCAGATTCTTTACAGTGATTTTCAAGCAAGGGTTGTCAATGG
AATATGCGAGCTTACTGAGTTTGCCAAGCGCCTTCCAAATTTCCATGATATATCTCTTCA
AGATCAGGTAATTCTATTAAAGTATGGAAGCTATGAGACCATGTTTGTACTCTTCAGTCG
ATTAATTTATGGAGAAGGCATGATTTTACCCAAGTCCAACATATACGTCACATTCAACTT
TGTGTATCAACTTGGTGTTGCTGGAGACATAATGAAATCGAAATTCTTATTTGCCAAGAA
GATGTTGGCACTAGAACTAACAGACGATGAAATGGCTCTCTTTGTTGCTATGATTATTCT
CTGTCCAGATCGACCCGAAATCAACGACCGCAAATTGGTAGAGCGAATACAGGAAAAAGT
TTTATTTGCATTGGAATATCAGCTCTCTATATCTCACCCTCACAAACCAAGGTTGTTCGC
CCACTTACTTTTAAAGATGGCGGAACTCCGGGAGCTGGTATCGAAGCATGTTGTCATGGT
GCAGAAATTGGCGGACGCTAAGGATTTCGTCCCACCTCTGCTTTGTGAGATCATGCAGGA
CATGAAATAACGATTTTTGCGCACGTATAACGTGGTTTTGGCTACTCTATGCATATTAAA
GCTCAAGCTGAGATTGTGGGGACAGCTTGTTCTAATGTGATGGGTATTTATTATTTCCTT
CATGCAACCAACATTGTACATGAGATTTTTTTTTAATTTCAAGAAAGAATTGTAATTAAC
AATGCTTTTCAAAGTTACATACATTTAACTCCCAATCTAGTTTATATTTTTTGTAACGTG
TTTCCAGTGTGTGTTGTAAAGTGGTGATGTATTGTGCAACTTTTTTGTTCCTCCGGCGCA
AGTGAATATTTGTTTTGAACCTGCCACTGTGATGTTAATTGTTTTGTAATTTATCTTTTA
TCGCATTGGTACTATGGGTGCTTTTTTTTGTGCTTTTCCAGGTTAAGACAAGCTTTGTGT
TCTAAGTTTTCGGTAAATTAGAGCTTGAAATTGAACAAAGATTCCATTTATTGTATAAGC
GATATTTCTGTACTCCGTGCAAAAAATGCCATGTTTTATAATTTATTGCTCTCAAGAAAT
CGAAAATATTTAAGCGACTTTGTCGATGCCGCTATCGGTCGTGGATAAATAGGGTTGAAT
TTCCGAGAAAGTATAATGACGATTAAGTTAATGAAAATAAAAATAATTATTT
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[44-114] 2.6E-33 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[44-118] 17.525 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[44-137] 3.9E-33 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[46-113] 3.2E-26 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[47-73] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[47-63] 1.2E-17 - T[63-78] 1.2E-17 - T[95-103] 1.2E-17 - T[103-111] 1.2E-17 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[107-117] 5.1E-20 - T[456-477] 5.1E-20 - T[477-493] 5.1E-20 - T[544-559] 5.1E-20 - T[601-618] 5.1E-20 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[439-638] 6.82E-55 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[453-474] 2.8E-6 - T[479-498] 2.8E-6 - T[544-566] 2.8E-6 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[455-613] 3.9E-22 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[463-618] 2.1E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PPARG_HUMAN | 51.515 % | 158 | 6.87E-42 |
| PPARD_HUMAN | 42.328 % | 162 | 6.26E-44 |
| PPARA_HUMAN | 69.149 % | 153 | 2.05E-40 |