- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C7.99.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C7.99.v2.A.ND1-1
Possible name(s)
HOXB13; HOXC12; HOXD12
Gene model
Location
KhC7 [2,695,878 / 2,699,953]
Amino acid sequence
Length: 159
>KH.C7.99.v2.A.ND1-1
SKGVSSSMRNVRTAYVMTVSAYCCAALGLQHGPSHSRKKRQPYSKTQISSLEREYKANNF
ITRQKRENIARDLKLSDRQVKIWFQNRRVKDKKIKQREIKDNQQHHQTTELQRRDSHTQK
QEMYQRHSAMIPIEMKNEHIRIDHIHSHVPGLGSASILM
Nucleotide sequence
Length: 1,278
>KH2012:KH.C7.99.v2.A.ND1-1
CCATATTAAGTTACTAATAAATGTTAGAGGTAATTTAACGGCAGCGGTGCTCTCTCGTCT
GCAGTTTGATCGAAAGGCGTATCCAGTTCAATGCGAAACGTCCGTACCGCATACGTAATG
ACTGTAAGCGCATATTGCTGTGCAGCGCTAGGTCTTCAACATGGACCATCACATTCTCGG
AAGAAACGCCAGCCTTACAGCAAAACCCAGATCAGCAGCCTTGAGCGTGAGTACAAAGCA
AACAACTTCATAACGCGACAGAAAAGAGAAAACATTGCAAGAGACCTGAAGCTTTCTGAC
CGCCAAGTCAAAATTTGGTTTCAAAATCGACGTGTTAAAGATAAGAAGATAAAGCAACGC
GAAATAAAAGACAACCAGCAGCACCACCAGACGACGGAGTTGCAGCGACGAGACAGCCAC
ACACAAAAACAAGAGATGTACCAACGTCACAGTGCAATGATTCCAATCGAAATGAAGAAC
GAACACATTCGAATCGACCACATTCACTCGCACGTTCCAGGTCTTGGATCAGCCTCTATA
CTAATGTAAACTAAAAGAGTCATTTCAAAACCTTTGTGCTTTTATTTCACCACTGCAACG
GTCTCCGGCCAAAACTCGATGTGCATCTTTCTCAATGCAATCTTTTTTCGTTTACACAAA
CCACATGGCTTTACACAATTGTAACATATATACTTGAACTTAAACTTCAATTATCTTCCA
TTTGGATCCGCGCATAGTATATTGCTGTGATTATCGTCTCCATGTTGGCGTAAGAGCTGT
GTATCCGCACATCTTTACATTTTACAATCAGTTTTATTTACGTACTGTCGTTACATTTTG
TATATTTTTGTCCCTAGTTCCATTTTTCTTTACATTATGTTTCATGTGCTGCATTTTCAT
TTAAGCTGGTAGGATTCTTAGGACAACTATAGTACCTTGGGGGTAAGATACCCTTTCTCA
AATAATATCCTGATCATGTTTTAAACAATTAACAACGCCCCATGTGAGTCGTAAGGATAC
AGTTTCATATTTCTTTGAATCCTCTTTGTTACGATCAAATAGGACTAGAAAATAGAATGA
AAAGATTTCCCTTCTTCCCCCACCATACTGTGTATGAGTTGCCACTCAATATTTCTCTGA
GAGGTCGGTTGTTTACCGGCAAAACAAATCCTAATCCAATGATACATTTACCTGTAACAC
TATCGACATATCAAATTTTAATTTAGCATTAGTATTGAAACATGGTTTTATATAAGTGCA
TGCGAAGATAAATTACAC
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[21-95] 3.08E-21 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[34-94] 19.872 |
| SMART |
Homeobox_dom (IPR001356) - T[36-98] 3.5E-21 |
| Pfam |
Homeobox_dom (IPR001356) - T[37-93] 6.2E-19 |
| CDD |
Homeobox_dom (IPR001356) - T[37-95] 3.18879E-17 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[58-69] 1.4E-5 - T[73-83] 1.4E-5 - T[83-92] 1.4E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[69-92] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXC12_HUMAN | 60 % | 84 | 3.21E-20 |
| HXD12_HUMAN | 56.164 % | 86.3 | 3.67E-21 |
| HXB13_HUMAN | 62.712 % | 82.4 | 1.51E-19 |