- Transcript 'KH2012:KH.C7.99.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C7.99.v1.A.SL2-1
Possible name(s)
HOXB13; HOXC12; HOXD12
Gene model
Location
KhC7 [2,695,878 / 2,697,092]
Amino acid sequence
Length: 133
>KH.C7.99.v1.A.SL2-1
LGLQHGPSHSRKKRQPYSKTQISSLEREYKANNFITRQKRENIARDLKLSDRQVKIWFQN
RRVKDKKIKQREIKDNQQHHQTTELQRRDSHTQKQEMYQRHSAMIPIEMKNEHIRIDHIH
SHVPGLGSASILM
Nucleotide sequence
Length: 1,133
>KH2012:KH.C7.99.v1.A.SL2-1
CGCTAGGTCTTCAACATGGACCATCACATTCTCGGAAGAAACGCCAGCCTTACAGCAAAA
CCCAGATCAGCAGCCTTGAGCGTGAGTACAAAGCAAACAACTTCATAACGCGACAGAAAA
GAGAAAACATTGCAAGAGACCTGAAGCTTTCTGACCGCCAAGTCAAAATTTGGTTTCAAA
ATCGACGTGTTAAAGATAAGAAGATAAAGCAACGCGAAATAAAAGACAACCAGCAGCACC
ACCAGACGACGGAGTTGCAGCGACGAGACAGCCACACACAAAAACAAGAGATGTACCAAC
GTCACAGTGCAATGATTCCAATCGAAATGAAGAACGAACACATTCGAATCGACCACATTC
ACTCGCACGTTCCAGGTCTTGGATCAGCCTCTATACTAATGTAAACTAAAAGAGTCATTT
CAAAACCTTTGTGCTTTTATTTCACCACTGCAACGGTCTCCGGCCAAAACTCGATGTGCA
TCTTTCTCAATGCAATCTTTTTTCGTTTACACAAACCACATGGCTTTACACAATTGTAAC
ATATATACTTGAACTTAAACTTCAATTATCTTCCATTTGGATCCGCGCATAGTATATTGC
TGTGATTATCGTCTCCATGTTGGCGTAAGAGCTGTGTATCCGCACATCTTTACATTTTAC
AATCAGTTTTATTTACGTACTGTCGTTACATTTTGTATATTTTTGTCCCTAGTTCCATTT
TTCTTTACATTATGTTTCATGTGCTGCATTTTCATTTAAGCTGGTAGGATTCTTAGGACA
ACTATAGTACCTTGGGGGTAAGATACCCTTTCTCAAATAATATCCTGATCATGTTTTAAA
CAATTAACAACGCCCCATGTGAGTCGTAAGGATACAGTTTCATATTTCTTTGAATCCTCT
TTGTTACGATCAAATAGGACTAGAAAATAGAATGAAAAGATTTCCCTTCTTCCCCCACCA
TACTGTGTATGAGTTGCCACTCAATATTTCTCTGAGAGGTCGGTTGTTTACCGGCAAAAC
AAATCCTAATCCAATGATACATTTACCTGTAACACTATCGACATATCAAATTTTAATTTA
GCATTAGTATTGAAACATGGTTTTATATAAGTGCATGCGAAGATAAATTACAC
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[5-69] 2.78E-20 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[8-68] 19.872 |
| SMART |
Homeobox_dom (IPR001356) - T[10-72] 3.5E-21 |
| Pfam |
Homeobox_dom (IPR001356) - T[11-67] 4.2E-19 |
| CDD |
Homeobox_dom (IPR001356) - T[11-69] 8.12998E-16 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[32-43] 9.9E-6 - T[47-57] 9.9E-6 - T[57-66] 9.9E-6 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[43-66] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXC12_HUMAN | 60 % | 82.8 | 4.09E-20 |
| HXD12_HUMAN | 56.164 % | 84.7 | 6.11E-21 |
| HXB13_HUMAN | 62.712 % | 81.6 | 1.02E-19 |
