- Transcript 'KH2012:KH.C3.148.v1....' >
- Transcript 'Phfumi.CG.MTP2014.S5...' >
- Transcript 'KH2012:KH.C7.760.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.760.v1.C.ND1-1
Possible name(s)
LDLR; LRP1B; SORL1
Gene model
Location
KhC7 [493,411 / 496,654]
Amino acid sequence
Length: 376
>KH.C7.760.v1.C.ND1-1
DAIEKRCFFKETNKNLCHSICKLSAFIHNIIIIGFPRVCDCQRDQGVCMKNGIRLRGRYS
DWMKCDGFNDCGDWSDENDCISECDTVNHKPCDCFFNGTCDRKDKVYFWPCYQSLYACDG
WNYCGDWSDERGCNFTCGRDEFQCDCDKNGQGCPIGSDYISHCYKQSDICDGYPLCTDWS
DEKNCTCEPGQLKCGCMLNSTNCTSNLGCVDVNYLLDGYGRCEDKSDEACQIKCVKYAKT
LSQGFKCRAKSEYFQLKQSCVLPQINLYNNNSYCEDGSDNCFVDGKLKCFRCLDGKLMIS
GKQVCDGVIDCYDLSDECLCQDQTLCDDVLGQFQKSCHSNEIICNGVCMKTNEVVCNNSI
YCNDSLNNKFGLRWCA
Nucleotide sequence
Length: 2,374
>KH2012:KH.C7.760.v1.C.ND1-1
TGGTTAAGATCAAATTGATTAAAACAACGAAGAGACGCAACTCAACAATAACCGTTAAAA
CAGGCTACTTGTAAAAAAAACTACTTGAGGAAAAGTGTTAAATAACACTTGGCTGCTAAA
CCAACATTAGAGTATAAATTAATTCAAATTAAGTTGTAGTTTATAATTAAAATAAATTAG
GATGCAATTGAAAAACGGTGCTTCTTTAAAGAGACAAATAAAAATTTATGTCACTCTATA
TGTAAACTTTCCGCTTTTATACACAATATAATAATTATAGGTTTTCCACGTGTATGCGAT
TGCCAAAGGGACCAAGGAGTTTGTATGAAAAACGGGATTCGTTTAAGGGGGCGTTACAGC
GATTGGATGAAGTGTGACGGTTTCAATGATTGTGGGGACTGGAGCGACGAAAATGACTGT
ATTAGTGAATGTGACACAGTAAATCATAAGCCGTGTGATTGCTTTTTTAATGGGACTTGC
GATCGTAAAGACAAAGTGTATTTCTGGCCGTGTTACCAAAGTTTGTATGCCTGTGATGGA
TGGAACTATTGCGGAGATTGGAGCGATGAAAGAGGGTGTAACTTCACGTGTGGCAGGGAT
GAATTTCAATGCGACTGCGACAAAAATGGACAAGGGTGTCCTATTGGCTCTGATTATATC
TCGCACTGTTATAAACAAAGCGATATATGCGATGGTTATCCTCTTTGTACGGACTGGTCG
GACGAAAAGAATTGTACATGCGAGCCTGGGCAGTTAAAATGCGGGTGCATGCTAAACTCA
ACGAACTGCACTTCTAACTTAGGATGTGTAGATGTGAACTATCTTCTGGATGGATACGGT
AGATGCGAAGATAAATCTGACGAAGCTTGTCAAATAAAGTGCGTGAAATATGCCAAAACA
TTGTCTCAAGGGTTTAAATGCAGGGCAAAGAGCGAATATTTCCAGCTCAAGCAATCGTGT
GTTCTTCCACAAATTAATCTTTACAACAACAACTCGTACTGCGAAGATGGCTCAGATAAT
TGCTTCGTTGATGGAAAGTTAAAATGTTTTCGTTGTTTGGATGGAAAGTTGATGATTTCA
GGCAAGCAAGTTTGCGATGGAGTAATAGATTGCTATGATTTATCCGACGAATGTTTGTGC
CAGGACCAAACTTTGTGTGATGACGTTTTGGGTCAGTTCCAAAAGAGCTGTCACTCAAAC
GAAATCATTTGCAATGGCGTTTGCATGAAAACCAATGAAGTTGTATGCAACAATTCCATA
TATTGTAACGACAGTTTGAACAACAAATTTGGTTTGCGATGGTGTGCATGATTGTAAAGA
TGGTTCAGATGAATTAGAATCGCTGTGTCAGTATTCCCGCTTCTACTGCCTCAACAAGCA
ACCTCTCTCTGTGGAAAGAAGCCGAGTTGAAAATGGATTCAAAGATTGTAGTGATGGCAG
CGACGAATGCCCGGCAAACAGTAATAAAACCTCCGTATTCTCATCCCCATTTGAAATGAT
TGGTAATCCAGTGTTCAGGGCATTTTTCTGGGTCATGGGAATTGTATGTTTGGTTGGGAA
TGGTGGAGTCTTTCTTCACACGGTGCTTTCACTATTAAGACCAGATCTCACTCAAATTAA
AGCTTCTCTACATTGGTTTGTACTCAACCTGTCAATATCAGATTTCTTGATGGGCGTCTA
CTTGGTTGCAATATCGAGCAAAGGAGTCGAGTACTCGGGTAGATATTGCTACCATGATGC
TGAATGGCGAACCAGCAATCATTGTTCGGGTTTCGGTTCACTAACGATCATTTCATCTGA
AGTTTCAGCTCTTACTATGGCGGTGATGGCTACGTTTCGATTAATTTCTGTTTATGAACC
ATTTAAGATGACGCATGTCAAATGGGTGACGTTTGTCATGCCAACAGTAGCAGCGTGGAT
TGTTGGGATTCTACTTGGAATATTGCCACTTCTAAATTTAAAATCTGGCTACTTTTTTGG
ATATTTCGGCGAAACAAGCGTCTGCATGCCCAAGTTGTTCTCCCATGTTGGTTCGGAGGC
TTGGGAGTATTCCACAGCATTAATCTGCATTAACTTTTTCTTATTCATCTACATGGTTGC
ATGCTACTTGTTTATGTATAAACGGAGTACAAAAATGAAATTCGACGCTCAAAGGAGCAA
CAAGCTACAGAAGACTATATCCCTTCTTATCCTCACCAACTTTTGTTGTTGGATTCCAAT
CTGTATCATGGCTTTTGTGAGCTTGTCTGGCGTCCAACTTGACCGAATCGTGTACGTCAT
CAGCGCTGGGGTGTTGCTTCCTATAAACAGCGTCATCAACCCGATCATTTATTCTGACGT
ATTGACGATTGTGGTTCGCAAAATAACAAAATAA
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[40-82] 0.075 - T[136-187] 0.017 - T[195-236] 0.054 - T[280-322] 0.025 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[56-77] 1.3E-19 - T[109-130] 1.3E-19 - T[161-182] 1.3E-19 - T[207-228] 1.3E-19 - T[259-280] 1.3E-19 - T[296-317] 1.3E-19 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[136-186] 10.363 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[289-320] 2.62E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SORL_HUMAN | 35.764 % | 79.7 | 5.19E-16 |