- Transcript 'Cisavi.CG.ENS81.R58....' >
- Transcript 'KH2012:KH.C2.108.v2....' >
- Transcript 'Cisavi.CG.ENS81.R16....' >
- Transcript 'KH2012:KH.C7.633.v2....'
Transcript Model
Transcript Id
KH2012:KH.C7.633.v2.A.nonSL4-1
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
KhC7 [1,095,563 / 1,117,198]
Amino acid sequence
Length: 865
>KH.C7.633.v2.A.nonSL4-1
ERSRGADAAAATLCYRRTSRNTSAEELCTMGVYGTMKILTAIGIKGQKGEPGEIPDNVGE
GLPGPAGIPGIPGLQGIDGRPGARGPKGDRGTPGRDGNPGTPGIPGPPGPPGAGMDGDLA
RSYSAGGKGPSPVIAGPPGVMGPRGSPGVSGSPGPQGFQGPPGETGEPGSSGPPGHAGPS
GIPGKPGKDGKDGRPGKTGPIGTPGPQGPRGFSGTPGNPGPKGHKGHAGLNGLKGDSGLA
GADGEQGAVGEAGPPGISGPRGLPGDRGRPGAAGEPGARGSDGLPGQSGPPGPTGIGGPP
GFPGAPGSKGEGGPTGARGPEGPQGSRGEAGTPGSPGPAGLAGSPGIDGASGSKGSTGAP
GIAGPPGIPGPRGSPGTQGNIGSAGPKGNTGNPGVQGFRGDQGPKGSMGSTGPQGLQGAQ
GEEGKRGSRGEAGPPGPIGSTGERGAPGNRGFPGQDGLSGPKGSTGRRGRPGVAGPKGSV
GDVGRSGEPGLPGARGLTGKPGADGRQGKQGQPGVSGEDGRAGPAGAPGQKGPPGQIGFP
GPKGVSGEPGRGGEKGAPGPIGATGPRGSSGDDGMRGPSGPAGPPGPPGPPGPGIDMAAF
RMPVISSFKGPNVAADQPVSDVGRDEEMMVVLKELTNSVENIKAPRGVSKKTAARSCMDI
YLAEQQQNIVAKNGIRWIDPNGGCTADGIEVYCNFDTMETCVYPTNRHIENGTHYTGESR
HVYYGEEMATGSTVRYDPSDEDRVPHADYTSQLTFLRLLSRQVKQHVTFYCRNMVAYYDA
AADNKAQALKLRGFGDAEFTAEGDPSTTYRVLHDGCTGRPSTWGKTDIEFTTGFVGRMPI
TDIAPFDIGGADQQFGAEFGPACFH
Nucleotide sequence
Length: 3,710
>KH2012:KH.C7.633.v2.A.nonSL4-1
GAACGTTCTAGGGGCGCGGACGCAGCAGCAGCGACCTTGTGCTACCGACGAACGAGTCGG
AATACATCGGCGGAGGAGCTGTGCACGATGGGTGTGTACGGCACTATGAAGATACTTACC
GCAATTGGTATTAAAGGACAAAAGGGAGAACCTGGAGAAATTCCAGACAATGTTGGGGAA
GGACTTCCAGGACCCGCAGGAATACCAGGTATTCCCGGACTACAAGGAATTGACGGACGG
CCAGGAGCAAGAGGTCCAAAGGGAGACAGAGGTACACCCGGACGTGATGGTAACCCCGGA
ACCCCTGGTATTCCCGGACCACCAGGACCCCCAGGTGCAGGAATGGACGGTGATCTTGCC
CGAAGTTATTCAGCTGGAGGCAAGGGACCAAGTCCAGTTATAGCTGGACCACCTGGAGTT
ATGGGACCAAGAGGATCACCAGGAGTTTCTGGTTCACCAGGACCCCAAGGATTCCAAGGA
CCCCCAGGAGAGACTGGTGAACCTGGATCTAGTGGACCACCCGGACATGCAGGACCTTCT
GGAATTCCAGGCAAACCAGGAAAAGATGGCAAGGATGGCAGACCAGGGAAAACTGGTCCA
ATTGGTACTCCTGGACCACAGGGACCGAGAGGATTTTCAGGCACACCTGGAAACCCAGGA
CCCAAAGGACATAAGGGTCATGCTGGTCTTAATGGTTTGAAAGGAGATAGTGGTCTTGCT
GGAGCAGATGGTGAACAAGGAGCAGTAGGAGAAGCTGGACCTCCTGGAATCAGTGGGCCG
AGAGGTCTACCTGGTGACAGAGGAAGGCCAGGAGCTGCTGGAGAACCAGGTGCTCGTGGA
TCTGATGGTCTTCCTGGACAATCTGGACCACCAGGACCAACTGGAATTGGTGGACCTCCA
GGATTCCCAGGTGCGCCAGGATCTAAGGGTGAAGGTGGACCTACTGGTGCAAGAGGACCT
GAAGGACCCCAGGGTTCAAGGGGTGAAGCAGGAACACCAGGCTCCCCTGGACCAGCTGGG
CTTGCGGGCTCTCCTGGTATTGATGGAGCATCAGGTTCCAAGGGATCAACTGGTGCACCC
GGCATTGCTGGACCACCAGGCATTCCCGGCCCAAGAGGCTCACCTGGTACACAAGGTAAT
ATCGGATCTGCTGGACCTAAAGGAAACACTGGAAACCCTGGTGTTCAAGGCTTCAGAGGT
GATCAAGGACCAAAAGGAAGCATGGGTAGTACTGGACCACAAGGTCTGCAAGGAGCACAA
GGAGAAGAAGGAAAGAGGGGTTCCAGAGGAGAAGCTGGACCTCCTGGACCAATTGGTTCA
ACTGGAGAGAGGGGTGCACCTGGTAACAGAGGATTCCCTGGACAAGATGGTCTATCTGGT
CCCAAGGGAAGCACTGGCAGAAGAGGACGACCTGGTGTTGCAGGACCTAAAGGATCAGTT
GGTGACGTTGGCAGATCTGGTGAACCTGGTCTTCCTGGTGCAAGGGGTCTTACAGGCAAG
CCTGGTGCTGATGGTAGACAAGGAAAGCAAGGTCAACCCGGTGTTAGTGGTGAAGACGGT
CGCGCTGGACCTGCTGGTGCTCCAGGACAGAAGGGACCACCGGGACAAATTGGTTTCCCA
GGACCTAAGGGTGTATCTGGAGAGCCAGGTCGAGGTGGTGAGAAAGGAGCACCTGGTCCC
ATTGGCGCTACTGGTCCACGTGGTTCGTCTGGTGACGATGGTATGAGGGGACCTTCTGGA
CCTGCTGGGCCACCTGGACCTCCTGGACCACCAGGGCCTGGAATCGACATGGCTGCCTTC
AGAATGCCAGTCATTAGTTCATTCAAGGGACCAAATGTTGCTGCAGATCAACCAGTCAGT
GATGTAGGCAGAGATGAAGAGATGATGGTTGTATTGAAAGAACTTACCAACTCCGTTGAG
AACATCAAAGCACCACGTGGTGTGAGCAAGAAGACAGCAGCTCGCTCCTGCATGGACATT
TACCTCGCAGAACAACAACAAAACATTGTTGCTAAGAATGGCATCAGATGGATTGATCCT
AATGGCGGCTGCACTGCTGATGGTATTGAGGTTTACTGTAACTTTGACACCATGGAGACA
TGCGTCTATCCAACCAACAGACACATCGAGAACGGAACCCATTACACCGGGGAGAGCCGG
CATGTGTACTACGGGGAAGAAATGGCCACTGGCAGCACAGTAAGATACGACCCATCTGAC
GAGGACAGAGTTCCACACGCAGATTACACATCGCAGCTCACTTTCTTGCGTCTGCTCAGT
CGTCAAGTCAAACAGCACGTTACCTTCTACTGTCGTAACATGGTGGCTTATTATGATGCT
GCTGCGGACAACAAAGCGCAAGCTCTGAAACTTCGTGGTTTTGGAGATGCTGAGTTTACT
GCTGAGGGAGATCCAAGCACAACATACAGGGTTCTCCATGATGGTTGCACTGGTCGCCCA
TCAACCTGGGGCAAGACAGACATCGAGTTCACCACTGGATTCGTTGGACGCATGCCAATC
ACTGATATTGCACCGTTCGATATCGGAGGTGCCGACCAGCAGTTTGGTGCTGAATTTGGC
CCAGCCTGCTTCCATTAAGCGGCGGTTAAATCCCCGCTGTACCCGAAAACGAACTGGGAA
TGTGACAACGACGACGACGAACTGCCCGCTCTTAAAACGGATTTGACGACACGTAGGTGG
GAGTTCGCTCCCGCGTTAAAAAAACTATTTTTATCTGACGACAACGACGACGACGGCTCT
GTAATGTAACATTGTACTTGTGTTTTTATGTCACGCATTTGTAGCACCGATAACGCCGCC
TTTTTTGCGTTTTTTCAGCCTAGTTAAATTGCGTTTTTTTTATGTATAACGAACATCCAA
ACTTACTCAGCATCCTGAAAAAATCCTCGCTCATTTTCGTTTCGCCCATTCAGCATATCT
TTCCACACGGCAGCGGCGTTTTCCACCTTTGCTGTTTTTTTCGTTATTATTATCATGTAG
CTTGCGCGACAGTATTATACCGTCACCGCTTTTTTTTTTGTCTAGCCTGACTGTACCTGC
ATTACTAAATCTTGCTTCGAACGCCTCATAGCCGTTCTCACAACGGCTTTTACCATTCAG
CATACCCCGCCGCCCAGCAGTGACGTATTACGTGTTACCTGAGCGTCACTTTTTTACAAA
ACGTCTTAACCCACGGCCACGTCTGGTGTGCAGTCTACCTGTGGTCGCATGTTTCCTGTG
TATAATCCCACTCCAGTCATAACCGGCTCGTGCCGCCTATCGTACCTTGCCCGCCTGTTG
GTCAGTGTTTTACGGAAAGCTTGGGCGTTCGCCTTTGGTGGAAGCCGTTACGGTTGACCG
ACCATCGTGTCACGTGAGCAGCTCGTAGTTGGAAGACGTCGTCCAACATTCGAAGTCGCC
ACCCGTTTCGGAAGCCGGCAGTTCCCATGATAGAGTTCGGTTAAAATTCCAACTACGTTT
ACCAGCACTAAATGTAGTTGGAGTTTTCTTCGTTCGGGAAAATAACTGCAGCCAATCCGC
GTCCGCGTCCTAGCCCACGTGATTCCCGTTCACCAATCAGAGCACGGCTTGGAAAATATG
TCCCGTGAAGACACCAAACCACCCGTATTCGCCTGATACTTTGTGTTTTTCTATTACTTT
GCTTTTATATCCTGCTATAAACGCGTGCACAATAAAACGACTTACGTCAA
| Pfam |
Collagen (IPR008160) - T[61-113] 2.9E-7 - T[136-194] 4.0E-9 - T[184-236] 1.6E-6 - T[484-542] 2.8E-7 - T[535-593] 1.9E-6 |
| Pfam |
Fib_collagen_C (IPR000885) - T[625-864] 1.2E-90 |
| SMART |
Fib_collagen_C (IPR000885) - T[625-865] 1.8E-83 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[626-865] 72.337 |
| ProDom |
Fib_collagen_C (IPR000885) - T[753-864] 2.0E-62 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 34.802 % | 297 | 7.68E-85 |
| CO5A2_HUMAN | 36.087 % | 318 | 4.8E-92 |
| CO1A2_HUMAN | 37.538 % | 354 | 2.1E-105 |