- Transcript 'KH2012:KH.C5.184.v2....' >
- Transcript 'KH2012:KH.C2.36.v2.A...' >
- Transcript 'KH2012:KH.C12.566.v1...' >
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- Transcript 'KH2012:KH.C7.633.v2....'
Transcript Model
Transcript Id
KH2012:KH.C7.633.v2.A.nonSL3-1
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
KhC7 [1,095,563 / 1,117,204]
Amino acid sequence
Length: 867
>KH.C7.633.v2.A.nonSL3-1
ILERSRGADAAAATLCYRRTSRNTSAEELCTMGVYGTMKILTAIGIKGQKGEPGEIPDNV
GEGLPGPAGIPGIPGLQGIDGRPGARGPKGDRGTPGRDGNPGTPGIPGPPGPPGAGMDGD
LARSYSAGGKGPSPVIAGPPGVMGPRGSPGVSGSPGPQGFQGPPGETGEPGSSGPPGHAG
PSGIPGKPGKDGKDGRPGKTGPIGTPGPQGPRGFSGTPGNPGPKGHKGHAGLNGLKGDSG
LAGADGEQGAVGEAGPPGISGPRGLPGDRGRPGAAGEPGARGSDGLPGQSGPPGPTGIGG
PPGFPGAPGSKGEGGPTGARGPEGPQGSRGEAGTPGSPGPAGLAGSPGIDGASGSKGSTG
APGIAGPPGIPGPRGSPGTQGNIGSAGPKGNTGNPGVQGFRGDQGPKGSMGSTGPQGLQG
AQGEEGKRGSRGEAGPPGPIGSTGERGAPGNRGFPGQDGLSGPKGSTGRRGRPGVAGPKG
SVGDVGRSGEPGLPGARGLTGKPGADGRQGKQGQPGVSGEDGRAGPAGAPGQKGPPGQIG
FPGPKGVSGEPGRGGEKGAPGPIGATGPRGSSGDDGMRGPSGPAGPPGPPGPPGPGIDMA
AFRMPVISSFKGPNVAADQPVSDVGRDEEMMVVLKELTNSVENIKAPRGVSKKTAARSCM
DIYLAEQQQNIVAKNGIRWIDPNGGCTADGIEVYCNFDTMETCVYPTNRHIENGTHYTGE
SRHVYYGEEMATGSTVRYDPSDEDRVPHADYTSQLTFLRLLSRQVKQHVTFYCRNMVAYY
DAAADNKAQALKLRGFGDAEFTAEGDPSTTYRVLHDGCTGRPSTWGKTDIEFTTGFVGRM
PITDIAPFDIGGADQQFGAEFGPACFH
Nucleotide sequence
Length: 3,716
>KH2012:KH.C7.633.v2.A.nonSL3-1
ATTCTCGAACGTTCTAGGGGCGCGGACGCAGCAGCAGCGACCTTGTGCTACCGACGAACG
AGTCGGAATACATCGGCGGAGGAGCTGTGCACGATGGGTGTGTACGGCACTATGAAGATA
CTTACCGCAATTGGTATTAAAGGACAAAAGGGAGAACCTGGAGAAATTCCAGACAATGTT
GGGGAAGGACTTCCAGGACCCGCAGGAATACCAGGTATTCCCGGACTACAAGGAATTGAC
GGACGGCCAGGAGCAAGAGGTCCAAAGGGAGACAGAGGTACACCCGGACGTGATGGTAAC
CCCGGAACCCCTGGTATTCCCGGACCACCAGGACCCCCAGGTGCAGGAATGGACGGTGAT
CTTGCCCGAAGTTATTCAGCTGGAGGCAAGGGACCAAGTCCAGTTATAGCTGGACCACCT
GGAGTTATGGGACCAAGAGGATCACCAGGAGTTTCTGGTTCACCAGGACCCCAAGGATTC
CAAGGACCCCCAGGAGAGACTGGTGAACCTGGATCTAGTGGACCACCCGGACATGCAGGA
CCTTCTGGAATTCCAGGCAAACCAGGAAAAGATGGCAAGGATGGCAGACCAGGGAAAACT
GGTCCAATTGGTACTCCTGGACCACAGGGACCGAGAGGATTTTCAGGCACACCTGGAAAC
CCAGGACCCAAAGGACATAAGGGTCATGCTGGTCTTAATGGTTTGAAAGGAGATAGTGGT
CTTGCTGGAGCAGATGGTGAACAAGGAGCAGTAGGAGAAGCTGGACCTCCTGGAATCAGT
GGGCCGAGAGGTCTACCTGGTGACAGAGGAAGGCCAGGAGCTGCTGGAGAACCAGGTGCT
CGTGGATCTGATGGTCTTCCTGGACAATCTGGACCACCAGGACCAACTGGAATTGGTGGA
CCTCCAGGATTCCCAGGTGCGCCAGGATCTAAGGGTGAAGGTGGACCTACTGGTGCAAGA
GGACCTGAAGGACCCCAGGGTTCAAGGGGTGAAGCAGGAACACCAGGCTCCCCTGGACCA
GCTGGGCTTGCGGGCTCTCCTGGTATTGATGGAGCATCAGGTTCCAAGGGATCAACTGGT
GCACCCGGCATTGCTGGACCACCAGGCATTCCCGGCCCAAGAGGCTCACCTGGTACACAA
GGTAATATCGGATCTGCTGGACCTAAAGGAAACACTGGAAACCCTGGTGTTCAAGGCTTC
AGAGGTGATCAAGGACCAAAAGGAAGCATGGGTAGTACTGGACCACAAGGTCTGCAAGGA
GCACAAGGAGAAGAAGGAAAGAGGGGTTCCAGAGGAGAAGCTGGACCTCCTGGACCAATT
GGTTCAACTGGAGAGAGGGGTGCACCTGGTAACAGAGGATTCCCTGGACAAGATGGTCTA
TCTGGTCCCAAGGGAAGCACTGGCAGAAGAGGACGACCTGGTGTTGCAGGACCTAAAGGA
TCAGTTGGTGACGTTGGCAGATCTGGTGAACCTGGTCTTCCTGGTGCAAGGGGTCTTACA
GGCAAGCCTGGTGCTGATGGTAGACAAGGAAAGCAAGGTCAACCCGGTGTTAGTGGTGAA
GACGGTCGCGCTGGACCTGCTGGTGCTCCAGGACAGAAGGGACCACCGGGACAAATTGGT
TTCCCAGGACCTAAGGGTGTATCTGGAGAGCCAGGTCGAGGTGGTGAGAAAGGAGCACCT
GGTCCCATTGGCGCTACTGGTCCACGTGGTTCGTCTGGTGACGATGGTATGAGGGGACCT
TCTGGACCTGCTGGGCCACCTGGACCTCCTGGACCACCAGGGCCTGGAATCGACATGGCT
GCCTTCAGAATGCCAGTCATTAGTTCATTCAAGGGACCAAATGTTGCTGCAGATCAACCA
GTCAGTGATGTAGGCAGAGATGAAGAGATGATGGTTGTATTGAAAGAACTTACCAACTCC
GTTGAGAACATCAAAGCACCACGTGGTGTGAGCAAGAAGACAGCAGCTCGCTCCTGCATG
GACATTTACCTCGCAGAACAACAACAAAACATTGTTGCTAAGAATGGCATCAGATGGATT
GATCCTAATGGCGGCTGCACTGCTGATGGTATTGAGGTTTACTGTAACTTTGACACCATG
GAGACATGCGTCTATCCAACCAACAGACACATCGAGAACGGAACCCATTACACCGGGGAG
AGCCGGCATGTGTACTACGGGGAAGAAATGGCCACTGGCAGCACAGTAAGATACGACCCA
TCTGACGAGGACAGAGTTCCACACGCAGATTACACATCGCAGCTCACTTTCTTGCGTCTG
CTCAGTCGTCAAGTCAAACAGCACGTTACCTTCTACTGTCGTAACATGGTGGCTTATTAT
GATGCTGCTGCGGACAACAAAGCGCAAGCTCTGAAACTTCGTGGTTTTGGAGATGCTGAG
TTTACTGCTGAGGGAGATCCAAGCACAACATACAGGGTTCTCCATGATGGTTGCACTGGT
CGCCCATCAACCTGGGGCAAGACAGACATCGAGTTCACCACTGGATTCGTTGGACGCATG
CCAATCACTGATATTGCACCGTTCGATATCGGAGGTGCCGACCAGCAGTTTGGTGCTGAA
TTTGGCCCAGCCTGCTTCCATTAAGCGGCGGTTAAATCCCCGCTGTACCCGAAAACGAAC
TGGGAATGTGACAACGACGACGACGAACTGCCCGCTCTTAAAACGGATTTGACGACACGT
AGGTGGGAGTTCGCTCCCGCGTTAAAAAAACTATTTTTATCTGACGACAACGACGACGAC
GGCTCTGTAATGTAACATTGTACTTGTGTTTTTATGTCACGCATTTGTAGCACCGATAAC
GCCGCCTTTTTTGCGTTTTTTCAGCCTAGTTAAATTGCGTTTTTTTTATGTATAACGAAC
ATCCAAACTTACTCAGCATCCTGAAAAAATCCTCGCTCATTTTCGTTTCGCCCATTCAGC
ATATCTTTCCACACGGCAGCGGCGTTTTCCACCTTTGCTGTTTTTTTCGTTATTATTATC
ATGTAGCTTGCGCGACAGTATTATACCGTCACCGCTTTTTTTTTTGTCTAGCCTGACTGT
ACCTGCATTACTAAATCTTGCTTCGAACGCCTCATAGCCGTTCTCACAACGGCTTTTACC
ATTCAGCATACCCCGCCGCCCAGCAGTGACGTATTACGTGTTACCTGAGCGTCACTTTTT
TACAAAACGTCTTAACCCACGGCCACGTCTGGTGTGCAGTCTACCTGTGGTCGCATGTTT
CCTGTGTATAATCCCACTCCAGTCATAACCGGCTCGTGCCGCCTATCGTACCTTGCCCGC
CTGTTGGTCAGTGTTTTACGGAAAGCTTGGGCGTTCGCCTTTGGTGGAAGCCGTTACGGT
TGACCGACCATCGTGTCACGTGAGCAGCTCGTAGTTGGAAGACGTCGTCCAACATTCGAA
GTCGCCACCCGTTTCGGAAGCCGGCAGTTCCCATGATAGAGTTCGGTTAAAATTCCAACT
ACGTTTACCAGCACTAAATGTAGTTGGAGTTTTCTTCGTTCGGGAAAATAACTGCAGCCA
ATCCGCGTCCGCGTCCTAGCCCACGTGATTCCCGTTCACCAATCAGAGCACGGCTTGGAA
AATATGTCCCGTGAAGACACCAAACCACCCGTATTCGCCTGATACTTTGTGTTTTTCTAT
TACTTTGCTTTTATATCCTGCTATAAACGCGTGCACAATAAAACGACTTACGTCAA
| Pfam |
Collagen (IPR008160) - T[63-115] 2.9E-7 - T[138-196] 4.0E-9 - T[186-238] 1.7E-6 - T[486-544] 2.8E-7 - T[537-595] 1.9E-6 |
| SMART |
Fib_collagen_C (IPR000885) - T[627-867] 1.8E-83 |
| Pfam |
Fib_collagen_C (IPR000885) - T[627-866] 1.2E-90 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[628-867] 72.337 |
| ProDom |
Fib_collagen_C (IPR000885) - T[755-866] 2.0E-62 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 34.802 % | 299 | 1.83E-85 |
| CO5A2_HUMAN | 36.087 % | 318 | 5.0E-92 |
| CO1A2_HUMAN | 37.538 % | 354 | 3.27E-105 |