- Transcript 'KH2012:KH.C7.633.v2....'
Transcript Model
Transcript Id
KH2012:KH.C7.633.v2.A.nonSL2-1
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
KhC7 [1,095,563 / 1,117,160]
Amino acid sequence
Length: 852
>KH.C7.633.v2.A.nonSL2-1
CYRRTSRNTSAEELCTMGVYGTMKILTAIGIKGQKGEPGEIPDNVGEGLPGPAGIPGIPG
LQGIDGRPGARGPKGDRGTPGRDGNPGTPGIPGPPGPPGAGMDGDLARSYSAGGKGPSPV
IAGPPGVMGPRGSPGVSGSPGPQGFQGPPGETGEPGSSGPPGHAGPSGIPGKPGKDGKDG
RPGKTGPIGTPGPQGPRGFSGTPGNPGPKGHKGHAGLNGLKGDSGLAGADGEQGAVGEAG
PPGISGPRGLPGDRGRPGAAGEPGARGSDGLPGQSGPPGPTGIGGPPGFPGAPGSKGEGG
PTGARGPEGPQGSRGEAGTPGSPGPAGLAGSPGIDGASGSKGSTGAPGIAGPPGIPGPRG
SPGTQGNIGSAGPKGNTGNPGVQGFRGDQGPKGSMGSTGPQGLQGAQGEEGKRGSRGEAG
PPGPIGSTGERGAPGNRGFPGQDGLSGPKGSTGRRGRPGVAGPKGSVGDVGRSGEPGLPG
ARGLTGKPGADGRQGKQGQPGVSGEDGRAGPAGAPGQKGPPGQIGFPGPKGVSGEPGRGG
EKGAPGPIGATGPRGSSGDDGMRGPSGPAGPPGPPGPPGPGIDMAAFRMPVISSFKGPNV
AADQPVSDVGRDEEMMVVLKELTNSVENIKAPRGVSKKTAARSCMDIYLAEQQQNIVAKN
GIRWIDPNGGCTADGIEVYCNFDTMETCVYPTNRHIENGTHYTGESRHVYYGEEMATGST
VRYDPSDEDRVPHADYTSQLTFLRLLSRQVKQHVTFYCRNMVAYYDAAADNKAQALKLRG
FGDAEFTAEGDPSTTYRVLHDGCTGRPSTWGKTDIEFTTGFVGRMPITDIAPFDIGGADQ
QFGAEFGPACFH
Nucleotide sequence
Length: 3,672
>KH2012:KH.C7.633.v2.A.nonSL2-1
GTGCTACCGACGAACGAGTCGGAATACATCGGCGGAGGAGCTGTGCACGATGGGTGTGTA
CGGCACTATGAAGATACTTACCGCAATTGGTATTAAAGGACAAAAGGGAGAACCTGGAGA
AATTCCAGACAATGTTGGGGAAGGACTTCCAGGACCCGCAGGAATACCAGGTATTCCCGG
ACTACAAGGAATTGACGGACGGCCAGGAGCAAGAGGTCCAAAGGGAGACAGAGGTACACC
CGGACGTGATGGTAACCCCGGAACCCCTGGTATTCCCGGACCACCAGGACCCCCAGGTGC
AGGAATGGACGGTGATCTTGCCCGAAGTTATTCAGCTGGAGGCAAGGGACCAAGTCCAGT
TATAGCTGGACCACCTGGAGTTATGGGACCAAGAGGATCACCAGGAGTTTCTGGTTCACC
AGGACCCCAAGGATTCCAAGGACCCCCAGGAGAGACTGGTGAACCTGGATCTAGTGGACC
ACCCGGACATGCAGGACCTTCTGGAATTCCAGGCAAACCAGGAAAAGATGGCAAGGATGG
CAGACCAGGGAAAACTGGTCCAATTGGTACTCCTGGACCACAGGGACCGAGAGGATTTTC
AGGCACACCTGGAAACCCAGGACCCAAAGGACATAAGGGTCATGCTGGTCTTAATGGTTT
GAAAGGAGATAGTGGTCTTGCTGGAGCAGATGGTGAACAAGGAGCAGTAGGAGAAGCTGG
ACCTCCTGGAATCAGTGGGCCGAGAGGTCTACCTGGTGACAGAGGAAGGCCAGGAGCTGC
TGGAGAACCAGGTGCTCGTGGATCTGATGGTCTTCCTGGACAATCTGGACCACCAGGACC
AACTGGAATTGGTGGACCTCCAGGATTCCCAGGTGCGCCAGGATCTAAGGGTGAAGGTGG
ACCTACTGGTGCAAGAGGACCTGAAGGACCCCAGGGTTCAAGGGGTGAAGCAGGAACACC
AGGCTCCCCTGGACCAGCTGGGCTTGCGGGCTCTCCTGGTATTGATGGAGCATCAGGTTC
CAAGGGATCAACTGGTGCACCCGGCATTGCTGGACCACCAGGCATTCCCGGCCCAAGAGG
CTCACCTGGTACACAAGGTAATATCGGATCTGCTGGACCTAAAGGAAACACTGGAAACCC
TGGTGTTCAAGGCTTCAGAGGTGATCAAGGACCAAAAGGAAGCATGGGTAGTACTGGACC
ACAAGGTCTGCAAGGAGCACAAGGAGAAGAAGGAAAGAGGGGTTCCAGAGGAGAAGCTGG
ACCTCCTGGACCAATTGGTTCAACTGGAGAGAGGGGTGCACCTGGTAACAGAGGATTCCC
TGGACAAGATGGTCTATCTGGTCCCAAGGGAAGCACTGGCAGAAGAGGACGACCTGGTGT
TGCAGGACCTAAAGGATCAGTTGGTGACGTTGGCAGATCTGGTGAACCTGGTCTTCCTGG
TGCAAGGGGTCTTACAGGCAAGCCTGGTGCTGATGGTAGACAAGGAAAGCAAGGTCAACC
CGGTGTTAGTGGTGAAGACGGTCGCGCTGGACCTGCTGGTGCTCCAGGACAGAAGGGACC
ACCGGGACAAATTGGTTTCCCAGGACCTAAGGGTGTATCTGGAGAGCCAGGTCGAGGTGG
TGAGAAAGGAGCACCTGGTCCCATTGGCGCTACTGGTCCACGTGGTTCGTCTGGTGACGA
TGGTATGAGGGGACCTTCTGGACCTGCTGGGCCACCTGGACCTCCTGGACCACCAGGGCC
TGGAATCGACATGGCTGCCTTCAGAATGCCAGTCATTAGTTCATTCAAGGGACCAAATGT
TGCTGCAGATCAACCAGTCAGTGATGTAGGCAGAGATGAAGAGATGATGGTTGTATTGAA
AGAACTTACCAACTCCGTTGAGAACATCAAAGCACCACGTGGTGTGAGCAAGAAGACAGC
AGCTCGCTCCTGCATGGACATTTACCTCGCAGAACAACAACAAAACATTGTTGCTAAGAA
TGGCATCAGATGGATTGATCCTAATGGCGGCTGCACTGCTGATGGTATTGAGGTTTACTG
TAACTTTGACACCATGGAGACATGCGTCTATCCAACCAACAGACACATCGAGAACGGAAC
CCATTACACCGGGGAGAGCCGGCATGTGTACTACGGGGAAGAAATGGCCACTGGCAGCAC
AGTAAGATACGACCCATCTGACGAGGACAGAGTTCCACACGCAGATTACACATCGCAGCT
CACTTTCTTGCGTCTGCTCAGTCGTCAAGTCAAACAGCACGTTACCTTCTACTGTCGTAA
CATGGTGGCTTATTATGATGCTGCTGCGGACAACAAAGCGCAAGCTCTGAAACTTCGTGG
TTTTGGAGATGCTGAGTTTACTGCTGAGGGAGATCCAAGCACAACATACAGGGTTCTCCA
TGATGGTTGCACTGGTCGCCCATCAACCTGGGGCAAGACAGACATCGAGTTCACCACTGG
ATTCGTTGGACGCATGCCAATCACTGATATTGCACCGTTCGATATCGGAGGTGCCGACCA
GCAGTTTGGTGCTGAATTTGGCCCAGCCTGCTTCCATTAAGCGGCGGTTAAATCCCCGCT
GTACCCGAAAACGAACTGGGAATGTGACAACGACGACGACGAACTGCCCGCTCTTAAAAC
GGATTTGACGACACGTAGGTGGGAGTTCGCTCCCGCGTTAAAAAAACTATTTTTATCTGA
CGACAACGACGACGACGGCTCTGTAATGTAACATTGTACTTGTGTTTTTATGTCACGCAT
TTGTAGCACCGATAACGCCGCCTTTTTTGCGTTTTTTCAGCCTAGTTAAATTGCGTTTTT
TTTATGTATAACGAACATCCAAACTTACTCAGCATCCTGAAAAAATCCTCGCTCATTTTC
GTTTCGCCCATTCAGCATATCTTTCCACACGGCAGCGGCGTTTTCCACCTTTGCTGTTTT
TTTCGTTATTATTATCATGTAGCTTGCGCGACAGTATTATACCGTCACCGCTTTTTTTTT
TGTCTAGCCTGACTGTACCTGCATTACTAAATCTTGCTTCGAACGCCTCATAGCCGTTCT
CACAACGGCTTTTACCATTCAGCATACCCCGCCGCCCAGCAGTGACGTATTACGTGTTAC
CTGAGCGTCACTTTTTTACAAAACGTCTTAACCCACGGCCACGTCTGGTGTGCAGTCTAC
CTGTGGTCGCATGTTTCCTGTGTATAATCCCACTCCAGTCATAACCGGCTCGTGCCGCCT
ATCGTACCTTGCCCGCCTGTTGGTCAGTGTTTTACGGAAAGCTTGGGCGTTCGCCTTTGG
TGGAAGCCGTTACGGTTGACCGACCATCGTGTCACGTGAGCAGCTCGTAGTTGGAAGACG
TCGTCCAACATTCGAAGTCGCCACCCGTTTCGGAAGCCGGCAGTTCCCATGATAGAGTTC
GGTTAAAATTCCAACTACGTTTACCAGCACTAAATGTAGTTGGAGTTTTCTTCGTTCGGG
AAAATAACTGCAGCCAATCCGCGTCCGCGTCCTAGCCCACGTGATTCCCGTTCACCAATC
AGAGCACGGCTTGGAAAATATGTCCCGTGAAGACACCAAACCACCCGTATTCGCCTGATA
CTTTGTGTTTTTCTATTACTTTGCTTTTATATCCTGCTATAAACGCGTGCACAATAAAAC
GACTTACGTCAA
| Pfam |
Collagen (IPR008160) - T[48-100] 2.6E-7 - T[123-181] 3.3E-9 - T[171-223] 1.6E-6 - T[471-529] 2.1E-8 - T[522-580] 1.9E-6 |
| Pfam |
Fib_collagen_C (IPR000885) - T[612-851] 1.1E-90 |
| SMART |
Fib_collagen_C (IPR000885) - T[612-852] 1.8E-83 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[613-852] 72.337 |
| ProDom |
Fib_collagen_C (IPR000885) - T[740-851] 2.0E-62 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 34.802 % | 298 | 2.98E-85 |
| CO5A2_HUMAN | 35.988 % | 318 | 1.55E-92 |
| CO1A2_HUMAN | 37.538 % | 355 | 7.05E-106 |