- Transcript 'KH2012:KH.C7.633.v2....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C7.546.v1....' >
- Transcript 'KH2012:KH.C7.633.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.633.v1.A.nonSL4-1
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
KhC7 [1,095,563 / 1,117,198]
Amino acid sequence
Length: 1,423
>KH.C7.633.v1.A.nonSL4-1
ERSRGADAAAATLCYRRTSRNTSAEELCTMGVYGTMKILTAIGIKGQKGEPGEIPDNVGE
GLPGPAGIPGIPGLQGIDGRPGARGPKGDRGTPGRDGNPGTPGIPGPPGPPGAGMDGDLA
RSYSAGGKGPSPVIAGPPGVMGPRGSPGVSGSPGPQGFQGPPGETGEPGSSGPPGHAGPS
GIPGKPGKDGKDGRPGKTGPIGTPGPQGPRGFSGTPGNPGPKGHKGHAGLNGLKGDSGLA
GADGEQGAVGEAGPPGISGPRGLPGDRGRPGAAGEPGARGSDGLPGQSGPPGPTGIGGPP
GFPGAPGSKGEGGPTGARGPEGPQGSRGEAGTPGSPGPAGLAGSPGIDGASGSKGSTGAP
GIAGPPGIPGPRGSPGTQGNIGSAGPKGNTGNPGVQGFRGDQGPKGSMGSTGPQGLQGAQ
GEEGKRGSRGEAGPPGPIGSTGERGAPGNRGFPGQDGLSGPKGSTGRRGRPGVAGPKGSV
GDVGRSGEPGLPGARGLTGKPGADGRQGKQGQPGVSGEDGRAGPAGAPGQKGPPGQIGFP
GPKGVSGEPGRGGEKGIAGPPGSRGLAGKDGEIGPQGPPGPNGVAGDRGEAGQPGPAGFQ
GLPGPPGPNGEPGKSGETGVPGEVGPSGEPGPRGERGFPGEVGTTGPQGLTGPRGAAGIP
GSDGQKGQTGPLGPPGEPGPQGVQGGTGRRGPPGLSGGKGDRGDLGPPGIEGEPGKEGLR
GLTGPIGPPGAQGPNGDKGDLGNTGPEGATGPRGSPGERGEPGPDGAPGYPGSPGAEGQS
GKKGESGSRGVKGDSGAPGLQGPAGGAGPIGPPGVAGRRGTRGAIGVPGPAGFPGPAGRP
GAPGDQGSSGQQGNPGEPGKPGSKGASGDEGPPGPQGESGLQGLPGQPGEPGSAGEPGPQ
GGPGASGLRGNPGSSGNPGLPGPSGPTGDRGPSGLQGEEGKQGRPGLPGDRGPPGDIGPV
GPSGPSGESGPEGMPGPEGAPGRDGSVGIKGEIGERGHTGPPGPSGIPGPPGLHGIEGKS
GPRGESGPPGSQGPPGPEGGRGQAGPQGARGDTGKTGDMGPRGIKGHRGYTGLQGLPGKL
GPTGDPGMPGTAGPQGLRGTTGPRGPAGNDGSPGAPGPIGATGPRGSSGDDGMRGPSGPA
GPPGPPGPPGPGIDMAAFRMPVISSFKGPNVAADQPVSDVGRDEEMMVVLKELTNSVENI
KAPRGVSKKTAARSCMDIYLAEQQQNIVAKNGIRWIDPNGGCTADGIEVYCNFDTMETCV
YPTNRHIENGTHYTGESRHVYYGEEMATGSTVRYDPSDEDRVPHADYTSQLTFLRLLSRQ
VKQHVTFYCRNMVAYYDAAADNKAQALKLRGFGDAEFTAEGDPSTTYRVLHDGCTGRPST
WGKTDIEFTTGFVGRMPITDIAPFDIGGADQQFGAEFGPACFH
Nucleotide sequence
Length: 5,384
>KH2012:KH.C7.633.v1.A.nonSL4-1
GAACGTTCTAGGGGCGCGGACGCAGCAGCAGCGACCTTGTGCTACCGACGAACGAGTCGG
AATACATCGGCGGAGGAGCTGTGCACGATGGGTGTGTACGGCACTATGAAGATACTTACC
GCAATTGGTATTAAAGGACAAAAGGGAGAACCTGGAGAAATTCCAGACAATGTTGGGGAA
GGACTTCCAGGACCCGCAGGAATACCAGGTATTCCCGGACTACAAGGAATTGACGGACGG
CCAGGAGCAAGAGGTCCAAAGGGAGACAGAGGTACACCCGGACGTGATGGTAACCCCGGA
ACCCCTGGTATTCCCGGACCACCAGGACCCCCAGGTGCAGGAATGGACGGTGATCTTGCC
CGAAGTTATTCAGCTGGAGGCAAGGGACCAAGTCCAGTTATAGCTGGACCACCTGGAGTT
ATGGGACCAAGAGGATCACCAGGAGTTTCTGGTTCACCAGGACCCCAAGGATTCCAAGGA
CCCCCAGGAGAGACTGGTGAACCTGGATCTAGTGGACCACCCGGACATGCAGGACCTTCT
GGAATTCCAGGCAAACCAGGAAAAGATGGCAAGGATGGCAGACCAGGGAAAACTGGTCCA
ATTGGTACTCCTGGACCACAGGGACCGAGAGGATTTTCAGGCACACCTGGAAACCCAGGA
CCCAAAGGACATAAGGGTCATGCTGGTCTTAATGGTTTGAAAGGAGATAGTGGTCTTGCT
GGAGCAGATGGTGAACAAGGAGCAGTAGGAGAAGCTGGACCTCCTGGAATCAGTGGGCCG
AGAGGTCTACCTGGTGACAGAGGAAGGCCAGGAGCTGCTGGAGAACCAGGTGCTCGTGGA
TCTGATGGTCTTCCTGGACAATCTGGACCACCAGGACCAACTGGAATTGGTGGACCTCCA
GGATTCCCAGGTGCGCCAGGATCTAAGGGTGAAGGTGGACCTACTGGTGCAAGAGGACCT
GAAGGACCCCAGGGTTCAAGGGGTGAAGCAGGAACACCAGGCTCCCCTGGACCAGCTGGG
CTTGCGGGCTCTCCTGGTATTGATGGAGCATCAGGTTCCAAGGGATCAACTGGTGCACCC
GGCATTGCTGGACCACCAGGCATTCCCGGCCCAAGAGGCTCACCTGGTACACAAGGTAAT
ATCGGATCTGCTGGACCTAAAGGAAACACTGGAAACCCTGGTGTTCAAGGCTTCAGAGGT
GATCAAGGACCAAAAGGAAGCATGGGTAGTACTGGACCACAAGGTCTGCAAGGAGCACAA
GGAGAAGAAGGAAAGAGGGGTTCCAGAGGAGAAGCTGGACCTCCTGGACCAATTGGTTCA
ACTGGAGAGAGGGGTGCACCTGGTAACAGAGGATTCCCTGGACAAGATGGTCTATCTGGT
CCCAAGGGAAGCACTGGCAGAAGAGGACGACCTGGTGTTGCAGGACCTAAAGGATCAGTT
GGTGACGTTGGCAGATCTGGTGAACCTGGTCTTCCTGGTGCAAGGGGTCTTACAGGCAAG
CCTGGTGCTGATGGTAGACAAGGAAAGCAAGGTCAACCCGGTGTTAGTGGTGAAGACGGT
CGCGCTGGACCTGCTGGTGCTCCAGGACAGAAGGGACCACCGGGACAAATTGGTTTCCCA
GGACCTAAGGGTGTATCTGGAGAGCCAGGTCGAGGTGGTGAGAAAGGTATTGCAGGTCCC
CCAGGATCACGTGGGTTGGCTGGTAAAGATGGAGAGATCGGACCACAGGGTCCACCAGGA
CCAAATGGTGTTGCTGGAGACAGAGGAGAAGCAGGACAACCTGGTCCAGCTGGGTTCCAA
GGTCTTCCAGGTCCTCCAGGACCTAACGGAGAGCCAGGAAAGTCTGGAGAAACTGGTGTT
CCAGGAGAGGTTGGTCCATCAGGAGAACCAGGACCCCGAGGTGAACGAGGTTTCCCTGGT
GAAGTTGGAACCACTGGACCACAAGGTCTTACTGGTCCACGCGGCGCTGCTGGTATTCCT
GGCTCTGATGGACAAAAGGGTCAAACCGGACCATTAGGTCCACCAGGTGAGCCTGGTCCT
CAAGGTGTACAAGGTGGAACTGGCCGACGTGGTCCTCCTGGTTTATCCGGAGGTAAGGGA
GACCGAGGAGATCTTGGTCCACCAGGTATTGAGGGAGAACCTGGAAAAGAAGGACTTCGG
GGTTTGACTGGACCTATTGGACCACCAGGAGCTCAAGGACCAAATGGTGACAAGGGAGAC
CTTGGTAACACTGGACCTGAAGGAGCAACTGGACCAAGAGGATCTCCTGGTGAAAGAGGA
GAACCAGGACCTGATGGGGCACCAGGTTATCCAGGATCACCTGGAGCTGAAGGACAATCA
GGAAAGAAGGGAGAATCTGGTTCCAGAGGTGTCAAGGGTGACTCAGGTGCTCCTGGATTA
CAAGGACCTGCTGGTGGTGCCGGACCAATTGGACCACCTGGAGTTGCTGGACGAAGAGGT
ACCCGCGGTGCTATTGGTGTTCCGGGACCTGCAGGTTTTCCAGGACCAGCTGGACGACCA
GGTGCACCAGGAGACCAGGGATCATCTGGACAGCAAGGTAACCCAGGAGAGCCAGGTAAA
CCTGGATCCAAGGGAGCTTCTGGTGACGAGGGACCTCCAGGACCACAAGGAGAATCAGGA
CTCCAAGGATTGCCAGGTCAACCTGGTGAGCCAGGATCTGCTGGAGAACCCGGACCACAG
GGTGGCCCAGGAGCATCAGGACTTAGAGGAAACCCAGGATCTTCTGGAAACCCAGGTCTG
CCTGGACCATCTGGACCAACTGGAGACAGGGGACCTTCTGGATTACAGGGAGAAGAGGGC
AAACAAGGACGACCAGGTCTTCCAGGAGACCGAGGTCCTCCTGGCGACATCGGCCCCGTT
GGACCATCAGGACCCTCTGGAGAGAGTGGTCCTGAGGGTATGCCTGGACCTGAAGGTGCA
CCTGGACGAGATGGCTCAGTAGGAATTAAGGGTGAAATTGGTGAGCGTGGGCACACTGGA
CCCCCAGGTCCATCTGGCATTCCAGGACCCCCAGGTCTTCATGGTATCGAAGGAAAGAGT
GGTCCACGTGGAGAATCAGGACCACCAGGATCCCAAGGACCTCCAGGCCCAGAGGGCGGC
AGAGGACAAGCTGGACCACAAGGTGCACGAGGTGACACGGGAAAAACTGGCGATATGGGA
CCAAGGGGTATCAAGGGTCACCGCGGTTACACTGGTCTACAAGGTCTTCCAGGAAAACTC
GGACCAACAGGAGACCCAGGAATGCCTGGAACTGCCGGACCACAAGGACTTAGAGGAACA
ACCGGTCCAAGAGGACCTGCTGGCAACGATGGATCCCCAGGAGCACCTGGTCCCATTGGC
GCTACTGGTCCACGTGGTTCGTCTGGTGACGATGGTATGAGGGGACCTTCTGGACCTGCT
GGGCCACCTGGACCTCCTGGACCACCAGGGCCTGGAATCGACATGGCTGCCTTCAGAATG
CCAGTCATTAGTTCATTCAAGGGACCAAATGTTGCTGCAGATCAACCAGTCAGTGATGTA
GGCAGAGATGAAGAGATGATGGTTGTATTGAAAGAACTTACCAACTCCGTTGAGAACATC
AAAGCACCACGTGGTGTGAGCAAGAAGACAGCAGCTCGCTCCTGCATGGACATTTACCTC
GCAGAACAACAACAAAACATTGTTGCTAAGAATGGCATCAGATGGATTGATCCTAATGGC
GGCTGCACTGCTGATGGTATTGAGGTTTACTGTAACTTTGACACCATGGAGACATGCGTC
TATCCAACCAACAGACACATCGAGAACGGAACCCATTACACCGGGGAGAGCCGGCATGTG
TACTACGGGGAAGAAATGGCCACTGGCAGCACAGTAAGATACGACCCATCTGACGAGGAC
AGAGTTCCACACGCAGATTACACATCGCAGCTCACTTTCTTGCGTCTGCTCAGTCGTCAA
GTCAAACAGCACGTTACCTTCTACTGTCGTAACATGGTGGCTTATTATGATGCTGCTGCG
GACAACAAAGCGCAAGCTCTGAAACTTCGTGGTTTTGGAGATGCTGAGTTTACTGCTGAG
GGAGATCCAAGCACAACATACAGGGTTCTCCATGATGGTTGCACTGGTCGCCCATCAACC
TGGGGCAAGACAGACATCGAGTTCACCACTGGATTCGTTGGACGCATGCCAATCACTGAT
ATTGCACCGTTCGATATCGGAGGTGCCGACCAGCAGTTTGGTGCTGAATTTGGCCCAGCC
TGCTTCCATTAAGCGGCGGTTAAATCCCCGCTGTACCCGAAAACGAACTGGGAATGTGAC
AACGACGACGACGAACTGCCCGCTCTTAAAACGGATTTGACGACACGTAGGTGGGAGTTC
GCTCCCGCGTTAAAAAAACTATTTTTATCTGACGACAACGACGACGACGGCTCTGTAATG
TAACATTGTACTTGTGTTTTTATGTCACGCATTTGTAGCACCGATAACGCCGCCTTTTTT
GCGTTTTTTCAGCCTAGTTAAATTGCGTTTTTTTTATGTATAACGAACATCCAAACTTAC
TCAGCATCCTGAAAAAATCCTCGCTCATTTTCGTTTCGCCCATTCAGCATATCTTTCCAC
ACGGCAGCGGCGTTTTCCACCTTTGCTGTTTTTTTCGTTATTATTATCATGTAGCTTGCG
CGACAGTATTATACCGTCACCGCTTTTTTTTTTGTCTAGCCTGACTGTACCTGCATTACT
AAATCTTGCTTCGAACGCCTCATAGCCGTTCTCACAACGGCTTTTACCATTCAGCATACC
CCGCCGCCCAGCAGTGACGTATTACGTGTTACCTGAGCGTCACTTTTTTACAAAACGTCT
TAACCCACGGCCACGTCTGGTGTGCAGTCTACCTGTGGTCGCATGTTTCCTGTGTATAAT
CCCACTCCAGTCATAACCGGCTCGTGCCGCCTATCGTACCTTGCCCGCCTGTTGGTCAGT
GTTTTACGGAAAGCTTGGGCGTTCGCCTTTGGTGGAAGCCGTTACGGTTGACCGACCATC
GTGTCACGTGAGCAGCTCGTAGTTGGAAGACGTCGTCCAACATTCGAAGTCGCCACCCGT
TTCGGAAGCCGGCAGTTCCCATGATAGAGTTCGGTTAAAATTCCAACTACGTTTACCAGC
ACTAAATGTAGTTGGAGTTTTCTTCGTTCGGGAAAATAACTGCAGCCAATCCGCGTCCGC
GTCCTAGCCCACGTGATTCCCGTTCACCAATCAGAGCACGGCTTGGAAAATATGTCCCGT
GAAGACACCAAACCACCCGTATTCGCCTGATACTTTGTGTTTTTCTATTACTTTGCTTTT
ATATCCTGCTATAAACGCGTGCACAATAAAACGACTTACGTCAA
| Pfam |
Collagen (IPR008160) - T[61-113] 6.8E-7 - T[136-194] 6.9E-9 - T[196-245] 6.7E-7 - T[624-679] 9.8E-8 - T[1093-1151] 6.5E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1183-1423] 1.8E-83 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1183-1422] 2.7E-90 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1184-1423] 72.337 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1311-1422] 9.0E-63 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO1A2_HUMAN | 51.591 % | 690 | 0 |
| CO2A1_HUMAN | 58.075 % | 764 | 0 |
| CO1A1_HUMAN | 55.832 % | 631 | 0 |