- Transcript 'KH2012:KH.C1.145.v1....' >
- EST 'FK176808.1' >
- Transcript 'KH2012:KH.C7.633.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.633.v1.A.nonSL3-1
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
KhC7 [1,095,563 / 1,117,204]
Amino acid sequence
Length: 1,425
>KH.C7.633.v1.A.nonSL3-1
ILERSRGADAAAATLCYRRTSRNTSAEELCTMGVYGTMKILTAIGIKGQKGEPGEIPDNV
GEGLPGPAGIPGIPGLQGIDGRPGARGPKGDRGTPGRDGNPGTPGIPGPPGPPGAGMDGD
LARSYSAGGKGPSPVIAGPPGVMGPRGSPGVSGSPGPQGFQGPPGETGEPGSSGPPGHAG
PSGIPGKPGKDGKDGRPGKTGPIGTPGPQGPRGFSGTPGNPGPKGHKGHAGLNGLKGDSG
LAGADGEQGAVGEAGPPGISGPRGLPGDRGRPGAAGEPGARGSDGLPGQSGPPGPTGIGG
PPGFPGAPGSKGEGGPTGARGPEGPQGSRGEAGTPGSPGPAGLAGSPGIDGASGSKGSTG
APGIAGPPGIPGPRGSPGTQGNIGSAGPKGNTGNPGVQGFRGDQGPKGSMGSTGPQGLQG
AQGEEGKRGSRGEAGPPGPIGSTGERGAPGNRGFPGQDGLSGPKGSTGRRGRPGVAGPKG
SVGDVGRSGEPGLPGARGLTGKPGADGRQGKQGQPGVSGEDGRAGPAGAPGQKGPPGQIG
FPGPKGVSGEPGRGGEKGIAGPPGSRGLAGKDGEIGPQGPPGPNGVAGDRGEAGQPGPAG
FQGLPGPPGPNGEPGKSGETGVPGEVGPSGEPGPRGERGFPGEVGTTGPQGLTGPRGAAG
IPGSDGQKGQTGPLGPPGEPGPQGVQGGTGRRGPPGLSGGKGDRGDLGPPGIEGEPGKEG
LRGLTGPIGPPGAQGPNGDKGDLGNTGPEGATGPRGSPGERGEPGPDGAPGYPGSPGAEG
QSGKKGESGSRGVKGDSGAPGLQGPAGGAGPIGPPGVAGRRGTRGAIGVPGPAGFPGPAG
RPGAPGDQGSSGQQGNPGEPGKPGSKGASGDEGPPGPQGESGLQGLPGQPGEPGSAGEPG
PQGGPGASGLRGNPGSSGNPGLPGPSGPTGDRGPSGLQGEEGKQGRPGLPGDRGPPGDIG
PVGPSGPSGESGPEGMPGPEGAPGRDGSVGIKGEIGERGHTGPPGPSGIPGPPGLHGIEG
KSGPRGESGPPGSQGPPGPEGGRGQAGPQGARGDTGKTGDMGPRGIKGHRGYTGLQGLPG
KLGPTGDPGMPGTAGPQGLRGTTGPRGPAGNDGSPGAPGPIGATGPRGSSGDDGMRGPSG
PAGPPGPPGPPGPGIDMAAFRMPVISSFKGPNVAADQPVSDVGRDEEMMVVLKELTNSVE
NIKAPRGVSKKTAARSCMDIYLAEQQQNIVAKNGIRWIDPNGGCTADGIEVYCNFDTMET
CVYPTNRHIENGTHYTGESRHVYYGEEMATGSTVRYDPSDEDRVPHADYTSQLTFLRLLS
RQVKQHVTFYCRNMVAYYDAAADNKAQALKLRGFGDAEFTAEGDPSTTYRVLHDGCTGRP
STWGKTDIEFTTGFVGRMPITDIAPFDIGGADQQFGAEFGPACFH
Nucleotide sequence
Length: 5,390
>KH2012:KH.C7.633.v1.A.nonSL3-1
ATTCTCGAACGTTCTAGGGGCGCGGACGCAGCAGCAGCGACCTTGTGCTACCGACGAACG
AGTCGGAATACATCGGCGGAGGAGCTGTGCACGATGGGTGTGTACGGCACTATGAAGATA
CTTACCGCAATTGGTATTAAAGGACAAAAGGGAGAACCTGGAGAAATTCCAGACAATGTT
GGGGAAGGACTTCCAGGACCCGCAGGAATACCAGGTATTCCCGGACTACAAGGAATTGAC
GGACGGCCAGGAGCAAGAGGTCCAAAGGGAGACAGAGGTACACCCGGACGTGATGGTAAC
CCCGGAACCCCTGGTATTCCCGGACCACCAGGACCCCCAGGTGCAGGAATGGACGGTGAT
CTTGCCCGAAGTTATTCAGCTGGAGGCAAGGGACCAAGTCCAGTTATAGCTGGACCACCT
GGAGTTATGGGACCAAGAGGATCACCAGGAGTTTCTGGTTCACCAGGACCCCAAGGATTC
CAAGGACCCCCAGGAGAGACTGGTGAACCTGGATCTAGTGGACCACCCGGACATGCAGGA
CCTTCTGGAATTCCAGGCAAACCAGGAAAAGATGGCAAGGATGGCAGACCAGGGAAAACT
GGTCCAATTGGTACTCCTGGACCACAGGGACCGAGAGGATTTTCAGGCACACCTGGAAAC
CCAGGACCCAAAGGACATAAGGGTCATGCTGGTCTTAATGGTTTGAAAGGAGATAGTGGT
CTTGCTGGAGCAGATGGTGAACAAGGAGCAGTAGGAGAAGCTGGACCTCCTGGAATCAGT
GGGCCGAGAGGTCTACCTGGTGACAGAGGAAGGCCAGGAGCTGCTGGAGAACCAGGTGCT
CGTGGATCTGATGGTCTTCCTGGACAATCTGGACCACCAGGACCAACTGGAATTGGTGGA
CCTCCAGGATTCCCAGGTGCGCCAGGATCTAAGGGTGAAGGTGGACCTACTGGTGCAAGA
GGACCTGAAGGACCCCAGGGTTCAAGGGGTGAAGCAGGAACACCAGGCTCCCCTGGACCA
GCTGGGCTTGCGGGCTCTCCTGGTATTGATGGAGCATCAGGTTCCAAGGGATCAACTGGT
GCACCCGGCATTGCTGGACCACCAGGCATTCCCGGCCCAAGAGGCTCACCTGGTACACAA
GGTAATATCGGATCTGCTGGACCTAAAGGAAACACTGGAAACCCTGGTGTTCAAGGCTTC
AGAGGTGATCAAGGACCAAAAGGAAGCATGGGTAGTACTGGACCACAAGGTCTGCAAGGA
GCACAAGGAGAAGAAGGAAAGAGGGGTTCCAGAGGAGAAGCTGGACCTCCTGGACCAATT
GGTTCAACTGGAGAGAGGGGTGCACCTGGTAACAGAGGATTCCCTGGACAAGATGGTCTA
TCTGGTCCCAAGGGAAGCACTGGCAGAAGAGGACGACCTGGTGTTGCAGGACCTAAAGGA
TCAGTTGGTGACGTTGGCAGATCTGGTGAACCTGGTCTTCCTGGTGCAAGGGGTCTTACA
GGCAAGCCTGGTGCTGATGGTAGACAAGGAAAGCAAGGTCAACCCGGTGTTAGTGGTGAA
GACGGTCGCGCTGGACCTGCTGGTGCTCCAGGACAGAAGGGACCACCGGGACAAATTGGT
TTCCCAGGACCTAAGGGTGTATCTGGAGAGCCAGGTCGAGGTGGTGAGAAAGGTATTGCA
GGTCCCCCAGGATCACGTGGGTTGGCTGGTAAAGATGGAGAGATCGGACCACAGGGTCCA
CCAGGACCAAATGGTGTTGCTGGAGACAGAGGAGAAGCAGGACAACCTGGTCCAGCTGGG
TTCCAAGGTCTTCCAGGTCCTCCAGGACCTAACGGAGAGCCAGGAAAGTCTGGAGAAACT
GGTGTTCCAGGAGAGGTTGGTCCATCAGGAGAACCAGGACCCCGAGGTGAACGAGGTTTC
CCTGGTGAAGTTGGAACCACTGGACCACAAGGTCTTACTGGTCCACGCGGCGCTGCTGGT
ATTCCTGGCTCTGATGGACAAAAGGGTCAAACCGGACCATTAGGTCCACCAGGTGAGCCT
GGTCCTCAAGGTGTACAAGGTGGAACTGGCCGACGTGGTCCTCCTGGTTTATCCGGAGGT
AAGGGAGACCGAGGAGATCTTGGTCCACCAGGTATTGAGGGAGAACCTGGAAAAGAAGGA
CTTCGGGGTTTGACTGGACCTATTGGACCACCAGGAGCTCAAGGACCAAATGGTGACAAG
GGAGACCTTGGTAACACTGGACCTGAAGGAGCAACTGGACCAAGAGGATCTCCTGGTGAA
AGAGGAGAACCAGGACCTGATGGGGCACCAGGTTATCCAGGATCACCTGGAGCTGAAGGA
CAATCAGGAAAGAAGGGAGAATCTGGTTCCAGAGGTGTCAAGGGTGACTCAGGTGCTCCT
GGATTACAAGGACCTGCTGGTGGTGCCGGACCAATTGGACCACCTGGAGTTGCTGGACGA
AGAGGTACCCGCGGTGCTATTGGTGTTCCGGGACCTGCAGGTTTTCCAGGACCAGCTGGA
CGACCAGGTGCACCAGGAGACCAGGGATCATCTGGACAGCAAGGTAACCCAGGAGAGCCA
GGTAAACCTGGATCCAAGGGAGCTTCTGGTGACGAGGGACCTCCAGGACCACAAGGAGAA
TCAGGACTCCAAGGATTGCCAGGTCAACCTGGTGAGCCAGGATCTGCTGGAGAACCCGGA
CCACAGGGTGGCCCAGGAGCATCAGGACTTAGAGGAAACCCAGGATCTTCTGGAAACCCA
GGTCTGCCTGGACCATCTGGACCAACTGGAGACAGGGGACCTTCTGGATTACAGGGAGAA
GAGGGCAAACAAGGACGACCAGGTCTTCCAGGAGACCGAGGTCCTCCTGGCGACATCGGC
CCCGTTGGACCATCAGGACCCTCTGGAGAGAGTGGTCCTGAGGGTATGCCTGGACCTGAA
GGTGCACCTGGACGAGATGGCTCAGTAGGAATTAAGGGTGAAATTGGTGAGCGTGGGCAC
ACTGGACCCCCAGGTCCATCTGGCATTCCAGGACCCCCAGGTCTTCATGGTATCGAAGGA
AAGAGTGGTCCACGTGGAGAATCAGGACCACCAGGATCCCAAGGACCTCCAGGCCCAGAG
GGCGGCAGAGGACAAGCTGGACCACAAGGTGCACGAGGTGACACGGGAAAAACTGGCGAT
ATGGGACCAAGGGGTATCAAGGGTCACCGCGGTTACACTGGTCTACAAGGTCTTCCAGGA
AAACTCGGACCAACAGGAGACCCAGGAATGCCTGGAACTGCCGGACCACAAGGACTTAGA
GGAACAACCGGTCCAAGAGGACCTGCTGGCAACGATGGATCCCCAGGAGCACCTGGTCCC
ATTGGCGCTACTGGTCCACGTGGTTCGTCTGGTGACGATGGTATGAGGGGACCTTCTGGA
CCTGCTGGGCCACCTGGACCTCCTGGACCACCAGGGCCTGGAATCGACATGGCTGCCTTC
AGAATGCCAGTCATTAGTTCATTCAAGGGACCAAATGTTGCTGCAGATCAACCAGTCAGT
GATGTAGGCAGAGATGAAGAGATGATGGTTGTATTGAAAGAACTTACCAACTCCGTTGAG
AACATCAAAGCACCACGTGGTGTGAGCAAGAAGACAGCAGCTCGCTCCTGCATGGACATT
TACCTCGCAGAACAACAACAAAACATTGTTGCTAAGAATGGCATCAGATGGATTGATCCT
AATGGCGGCTGCACTGCTGATGGTATTGAGGTTTACTGTAACTTTGACACCATGGAGACA
TGCGTCTATCCAACCAACAGACACATCGAGAACGGAACCCATTACACCGGGGAGAGCCGG
CATGTGTACTACGGGGAAGAAATGGCCACTGGCAGCACAGTAAGATACGACCCATCTGAC
GAGGACAGAGTTCCACACGCAGATTACACATCGCAGCTCACTTTCTTGCGTCTGCTCAGT
CGTCAAGTCAAACAGCACGTTACCTTCTACTGTCGTAACATGGTGGCTTATTATGATGCT
GCTGCGGACAACAAAGCGCAAGCTCTGAAACTTCGTGGTTTTGGAGATGCTGAGTTTACT
GCTGAGGGAGATCCAAGCACAACATACAGGGTTCTCCATGATGGTTGCACTGGTCGCCCA
TCAACCTGGGGCAAGACAGACATCGAGTTCACCACTGGATTCGTTGGACGCATGCCAATC
ACTGATATTGCACCGTTCGATATCGGAGGTGCCGACCAGCAGTTTGGTGCTGAATTTGGC
CCAGCCTGCTTCCATTAAGCGGCGGTTAAATCCCCGCTGTACCCGAAAACGAACTGGGAA
TGTGACAACGACGACGACGAACTGCCCGCTCTTAAAACGGATTTGACGACACGTAGGTGG
GAGTTCGCTCCCGCGTTAAAAAAACTATTTTTATCTGACGACAACGACGACGACGGCTCT
GTAATGTAACATTGTACTTGTGTTTTTATGTCACGCATTTGTAGCACCGATAACGCCGCC
TTTTTTGCGTTTTTTCAGCCTAGTTAAATTGCGTTTTTTTTATGTATAACGAACATCCAA
ACTTACTCAGCATCCTGAAAAAATCCTCGCTCATTTTCGTTTCGCCCATTCAGCATATCT
TTCCACACGGCAGCGGCGTTTTCCACCTTTGCTGTTTTTTTCGTTATTATTATCATGTAG
CTTGCGCGACAGTATTATACCGTCACCGCTTTTTTTTTTGTCTAGCCTGACTGTACCTGC
ATTACTAAATCTTGCTTCGAACGCCTCATAGCCGTTCTCACAACGGCTTTTACCATTCAG
CATACCCCGCCGCCCAGCAGTGACGTATTACGTGTTACCTGAGCGTCACTTTTTTACAAA
ACGTCTTAACCCACGGCCACGTCTGGTGTGCAGTCTACCTGTGGTCGCATGTTTCCTGTG
TATAATCCCACTCCAGTCATAACCGGCTCGTGCCGCCTATCGTACCTTGCCCGCCTGTTG
GTCAGTGTTTTACGGAAAGCTTGGGCGTTCGCCTTTGGTGGAAGCCGTTACGGTTGACCG
ACCATCGTGTCACGTGAGCAGCTCGTAGTTGGAAGACGTCGTCCAACATTCGAAGTCGCC
ACCCGTTTCGGAAGCCGGCAGTTCCCATGATAGAGTTCGGTTAAAATTCCAACTACGTTT
ACCAGCACTAAATGTAGTTGGAGTTTTCTTCGTTCGGGAAAATAACTGCAGCCAATCCGC
GTCCGCGTCCTAGCCCACGTGATTCCCGTTCACCAATCAGAGCACGGCTTGGAAAATATG
TCCCGTGAAGACACCAAACCACCCGTATTCGCCTGATACTTTGTGTTTTTCTATTACTTT
GCTTTTATATCCTGCTATAAACGCGTGCACAATAAAACGACTTACGTCAA
| Pfam |
Collagen (IPR008160) - T[138-196] 6.3E-9 - T[198-248] 5.2E-7 |
| SMART |
Fib_collagen_C (IPR000885) - T[1185-1425] 1.8E-83 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1185-1424] 2.7E-90 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1186-1425] 72.337 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1313-1424] 8.0E-63 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO1A2_HUMAN | 51.591 % | 689 | 0 |
| CO2A1_HUMAN | 58.075 % | 765 | 0 |
| CO1A1_HUMAN | 55.832 % | 631 | 0 |