Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.C9.224.v1....' > 
  2. Transcript 'KH2012:KH.C7.523.v1....'

Transcript Model

Transcript Id

KH2012:KH.C7.523.v1.A.nonSL3-1

Possible name(s)

SOX11; SOX12; SOX4

Gene model

KH2012:KH.C7.523

Location

KhC7 [2,395,323 / 2,414,153]

Sequences

Amino acid sequence

Length: 438

>KH.C7.523.v1.A.nonSL3-1
PIKKEADFKDPKPRQSPNKNKRENILNELKNLPATKIKLPPPSRSSQKKLAARPGYIKRP
MNAFMIWSQIERRKIMEKTPELHNAEISRNLGRIWREQADSIKRPFLIEAERLRLQHMCD
YPDYKYKPKKKAKGKKCDSSENSTFSYLHNDPDQSMEIIETNTEALKAEVKVSSKRLPKK
RKLSQSKPSLPEIKPTVVASINPIQNNSGNSEPQAKEVTATTNNLLTAVKVEPRVPPLPI
TPATIVTAVPSKRGRFEVHTPSPCDTNQRIGLVHGTVFKTVTEGNRQFIIVSGANDVISD
VTNSSLVSTQRTSTPCQQKQIINANFVPITNDCGQEKVYNIVRGCIQVASQEPTNSTTQK
RVEPDVPTTFANMGDDFRNEYLKEDHFIDQITLSSGIAYADPCRRKSHFEFSDYDTDEVK
RMIESSDLAWLRDDICCP

Nucleotide sequence

Length: 2,398

>KH2012:KH.C7.523.v1.A.nonSL3-1
GTCCGATCAAAAAAGAGGCTGACTTTAAAGACCCGAAACCCAGACAGTCGCCGAACAAGA
ACAAGAGGGAAAACATATTGAACGAGTTGAAAAACCTACCCGCTACAAAGATCAAATTGC
CTCCGCCGTCGCGAAGCAGTCAAAAGAAACTGGCGGCGAGGCCTGGCTACATCAAGCGCC
CAATGAATGCGTTCATGATATGGTCGCAAATCGAACGGAGAAAGATAATGGAGAAAACTC
CAGAGCTACACAATGCTGAAATCAGCCGCAATCTAGGTCGAATCTGGAGGGAGCAGGCGG
ATTCGATTAAGCGGCCGTTTCTGATCGAAGCGGAGAGATTACGACTGCAGCATATGTGCG
ACTACCCTGATTATAAATATAAACCGAAAAAGAAAGCAAAGGGCAAAAAATGCGACTCGT
CAGAGAACTCTACGTTCAGTTATTTGCACAACGATCCAGATCAATCCATGGAAATTATAG
AAACGAATACTGAAGCCTTAAAGGCGGAAGTAAAAGTGTCCAGCAAACGTTTGCCAAAGA
AACGAAAGCTGTCTCAAAGCAAGCCTTCTTTACCTGAAATCAAACCGACAGTCGTGGCCT
CTATCAATCCCATTCAAAACAACTCAGGTAACAGCGAACCGCAAGCCAAAGAAGTCACCG
CAACAACGAACAATCTGCTGACGGCGGTTAAAGTCGAGCCACGGGTGCCACCTCTGCCGA
TTACCCCAGCTACGATCGTGACGGCCGTGCCTTCCAAACGTGGCAGGTTCGAAGTACATA
CCCCCTCCCCTTGCGATACGAACCAGAGGATAGGTTTGGTGCATGGAACTGTCTTCAAAA
CCGTCACCGAAGGAAATCGCCAGTTCATCATCGTTTCCGGTGCTAATGACGTCATTTCTG
ACGTCACAAACTCGAGCTTGGTGTCGACGCAACGAACATCAACACCTTGCCAACAAAAAC
AAATAATAAACGCTAACTTTGTGCCGATAACCAACGACTGCGGACAAGAAAAAGTGTATA
ACATTGTAAGAGGGTGCATACAAGTGGCGAGTCAGGAACCAACGAACTCTACCACACAGA
AACGCGTGGAGCCTGATGTCCCAACTACATTTGCCAACATGGGCGATGACTTCCGGAACG
AATACCTGAAGGAAGATCACTTTATTGACCAAATCACATTAAGCAGCGGGATAGCATATG
CTGATCCTTGCAGAAGGAAATCACATTTCGAGTTCTCAGACTACGACACAGATGAAGTTA
AACGGATGATTGAAAGTTCCGACCTAGCGTGGCTCAGGGACGACATCTGCTGTCCGTAAT
TTTAAGCGTCACCCACCACCAAGCGGCGCGTTTCGCAATATTGAACTTTTAGCCATAGAC
CGCAATTTTAATGCTATATCTTTGGTTCTTTTAACGCATTACGAAAGATATAGCATTAAT
TCGCGGCCGGATATACCTGTGGTTGATTTTTTTTTTGTTCCGCAATTATTCAAGCTTGGT
TTTCACTGGCCACTGCTAAACTTGTCATATAAATACTCCTCACTAATACACATGTACAAA
ATTATAATTCACGTAAAATTCAATTTTACTGTGTCGTTCATACTTCTAGTGAAAACCTCG
CTTGAATGAGTTGTTTTGTTCCATTTACCCCTTTCTGTGGTTTGTTTTGTAAATCGTACG
TTTGCTATTTCATATCTTGCTCGATATCTCATGCCTTACATTATATCGGCCTTTCAATAT
ACCCCGTACCTCTGGACCACTGTCCGTTTTACCAGGTAGATCCCACACTTTCGTGCCAGT
ACACCGTTTGCCGCACAGTGTTGCCGACTTTGCACTAATTTACCATGCTCTCCAATCTGT
TACCTGTAATCCATCAATCAAAATAACGCACTCGGCATCACTGGCACCGCGCAAACGACC
TGGTACAAAGTCCTTACGTTGTTTTTTAACCGTCTTTACCTCAAACCCTTCAACCTTCGG
GCCCTGATCGATTTTTCTGTTTTATTTTCATTTTTTCTCACACAGTAACCCAGTACAATA
CAGAATCCCAAGTAAATGGTCTGCAGTGTACAGTATAGTGCTCGAACAACTGTGTACATT
TCTAGCAATCGTTGTAACCGCAAAAAAATTGTAAATACTGGTAGTCGAACCCCCCAAAGT
GCTGCCTTGTGCAAATGTTAACGTAAATCGGTTGGCACTATAAATTAATTGCAAACCACA
AAACCTGCTTCCCTGTGCTCAGTTGTCACTGCTTTTGGTCTTTCTAATTCTGCCTGTTTT
TGTTTCGCCACTTTCTCTTTTGTAGATATTTTTATCGCCTGTTCTCTGCTGGTTGGAGAC
TATTTTTTGACGTGTTTTAAGCGCATTCGGACGAACCTGCATATACACCACACATGAA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[40-128] 3.4E-24
Gene3D
HMG_box_dom_sf (IPR036910) - T[55-135] 2.8E-24
SMART
HMG_box_dom (IPR009071) - T[56-126] 1.1E-19
Pfam
HMG_box_dom (IPR009071) - T[57-125] 1.2E-20
ProSiteProfiles
HMG_box_dom (IPR009071) - T[57-125] 19.588

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX11_HUMAN 69.62 % 128 8.92E-33
SOX4_HUMAN 70.886 % 130 2.45E-33
SOX12_HUMAN 70 % 127 3.37E-33