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  1. Transcript 'Haaura.CG.MTP2014.S4...' > 
  2. Transcript 'KH2012:KH.L119.19.v1...' > 
  3. Transcript 'Cisavi.CG.ENS81.R5.6...' > 
  4. Molecular Tool 'Etr>Onecut-WRPW (D'Aniello 2011)' > 
  5. Transcript 'KH2012:KH.C7.523.v1....'

Transcript Model

Transcript Id

KH2012:KH.C7.523.v1.A.nonSL2-1

Possible name(s)

SOX11; SOX12; SOX4

Gene model

KH2012:KH.C7.523

Location

KhC7 [2,394,893 / 2,414,153]

Sequences

Amino acid sequence

Length: 547

>KH.C7.523.v1.A.nonSL2-1
NRRTTNAREFQDCIFIFWTSSAMASTSRLTKISAELMSLHAGQNLDGNPGSPESGLGSDW
DFDSDEIVQSSSVATPRRSIDALHASSPSPTLECILDCPDVSGVDVFDSPIKKEADFKDP
KPRQSPNKNKRENILNELKNLPATKIKLPPPSRSSQKKLAARPGYIKRPMNAFMIWSQIE
RRKIMEKTPELHNAEISRNLGRIWREQADSIKRPFLIEAERLRLQHMCDYPDYKYKPKKK
AKGKKCDSSENSTFSYLHNDPDQSMEIIETNTEALKAEVKVSSKRLPKKRKLSQSKPSLP
EIKPTVVASINPIQNNSGNSEPQAKEVTATTNNLLTAVKVEPRVPPLPITPATIVTAVPS
KRGRFEVHTPSPCDTNQRIGLVHGTVFKTVTEGNRQFIIVSGANDVISDVTNSSLVSTQR
TSTPCQQKQIINANFVPITNDCGQEKVYNIVRGCIQVASQEPTNSTTQKRVEPDVPTTFA
NMGDDFRNEYLKEDHFIDQITLSSGIAYADPCRRKSHFEFSDYDTDEVKRMIESSDLAWL
RDDICCP

Nucleotide sequence

Length: 2,828

>KH2012:KH.C7.523.v1.A.nonSL2-1
AATACTAGTTTTGTTTATGTTTAGATAACTGCTGTATTACGTCGCCTTATGAACAATTGT
TATTATAATGCTTAATGGTGTAAGTGCATCTTACTGTTAATGTAAAACCGAAGAACAACC
AACGCAAGAGAATTTCAAGATTGTATATTTATATTCTGGACTAGTTCAGCTATGGCAAGT
ACATCAAGACTTACAAAGATTTCGGCCGAACTAATGAGCTTGCACGCCGGCCAAAATTTG
GACGGCAACCCGGGCTCGCCAGAGTCGGGCTTGGGCTCGGACTGGGACTTTGACAGCGAT
GAAATCGTGCAATCCAGTTCTGTAGCTACACCAAGAAGGTCAATAGACGCCCTACATGCT
TCATCTCCCTCTCCAACATTGGAATGTATCCTAGATTGCCCTGATGTTAGCGGAGTAGAC
GTGTTTGACAGTCCGATCAAAAAAGAGGCTGACTTTAAAGACCCGAAACCCAGACAGTCG
CCGAACAAGAACAAGAGGGAAAACATATTGAACGAGTTGAAAAACCTACCCGCTACAAAG
ATCAAATTGCCTCCGCCGTCGCGAAGCAGTCAAAAGAAACTGGCGGCGAGGCCTGGCTAC
ATCAAGCGCCCAATGAATGCGTTCATGATATGGTCGCAAATCGAACGGAGAAAGATAATG
GAGAAAACTCCAGAGCTACACAATGCTGAAATCAGCCGCAATCTAGGTCGAATCTGGAGG
GAGCAGGCGGATTCGATTAAGCGGCCGTTTCTGATCGAAGCGGAGAGATTACGACTGCAG
CATATGTGCGACTACCCTGATTATAAATATAAACCGAAAAAGAAAGCAAAGGGCAAAAAA
TGCGACTCGTCAGAGAACTCTACGTTCAGTTATTTGCACAACGATCCAGATCAATCCATG
GAAATTATAGAAACGAATACTGAAGCCTTAAAGGCGGAAGTAAAAGTGTCCAGCAAACGT
TTGCCAAAGAAACGAAAGCTGTCTCAAAGCAAGCCTTCTTTACCTGAAATCAAACCGACA
GTCGTGGCCTCTATCAATCCCATTCAAAACAACTCAGGTAACAGCGAACCGCAAGCCAAA
GAAGTCACCGCAACAACGAACAATCTGCTGACGGCGGTTAAAGTCGAGCCACGGGTGCCA
CCTCTGCCGATTACCCCAGCTACGATCGTGACGGCCGTGCCTTCCAAACGTGGCAGGTTC
GAAGTACATACCCCCTCCCCTTGCGATACGAACCAGAGGATAGGTTTGGTGCATGGAACT
GTCTTCAAAACCGTCACCGAAGGAAATCGCCAGTTCATCATCGTTTCCGGTGCTAATGAC
GTCATTTCTGACGTCACAAACTCGAGCTTGGTGTCGACGCAACGAACATCAACACCTTGC
CAACAAAAACAAATAATAAACGCTAACTTTGTGCCGATAACCAACGACTGCGGACAAGAA
AAAGTGTATAACATTGTAAGAGGGTGCATACAAGTGGCGAGTCAGGAACCAACGAACTCT
ACCACACAGAAACGCGTGGAGCCTGATGTCCCAACTACATTTGCCAACATGGGCGATGAC
TTCCGGAACGAATACCTGAAGGAAGATCACTTTATTGACCAAATCACATTAAGCAGCGGG
ATAGCATATGCTGATCCTTGCAGAAGGAAATCACATTTCGAGTTCTCAGACTACGACACA
GATGAAGTTAAACGGATGATTGAAAGTTCCGACCTAGCGTGGCTCAGGGACGACATCTGC
TGTCCGTAATTTTAAGCGTCACCCACCACCAAGCGGCGCGTTTCGCAATATTGAACTTTT
AGCCATAGACCGCAATTTTAATGCTATATCTTTGGTTCTTTTAACGCATTACGAAAGATA
TAGCATTAATTCGCGGCCGGATATACCTGTGGTTGATTTTTTTTTTGTTCCGCAATTATT
CAAGCTTGGTTTTCACTGGCCACTGCTAAACTTGTCATATAAATACTCCTCACTAATACA
CATGTACAAAATTATAATTCACGTAAAATTCAATTTTACTGTGTCGTTCATACTTCTAGT
GAAAACCTCGCTTGAATGAGTTGTTTTGTTCCATTTACCCCTTTCTGTGGTTTGTTTTGT
AAATCGTACGTTTGCTATTTCATATCTTGCTCGATATCTCATGCCTTACATTATATCGGC
CTTTCAATATACCCCGTACCTCTGGACCACTGTCCGTTTTACCAGGTAGATCCCACACTT
TCGTGCCAGTACACCGTTTGCCGCACAGTGTTGCCGACTTTGCACTAATTTACCATGCTC
TCCAATCTGTTACCTGTAATCCATCAATCAAAATAACGCACTCGGCATCACTGGCACCGC
GCAAACGACCTGGTACAAAGTCCTTACGTTGTTTTTTAACCGTCTTTACCTCAAACCCTT
CAACCTTCGGGCCCTGATCGATTTTTCTGTTTTATTTTCATTTTTTCTCACACAGTAACC
CAGTACAATACAGAATCCCAAGTAAATGGTCTGCAGTGTACAGTATAGTGCTCGAACAAC
TGTGTACATTTCTAGCAATCGTTGTAACCGCAAAAAAATTGTAAATACTGGTAGTCGAAC
CCCCCAAAGTGCTGCCTTGTGCAAATGTTAACGTAAATCGGTTGGCACTATAAATTAATT
GCAAACCACAAAACCTGCTTCCCTGTGCTCAGTTGTCACTGCTTTTGGTCTTTCTAATTC
TGCCTGTTTTTGTTTCGCCACTTTCTCTTTTGTAGATATTTTTATCGCCTGTTCTCTGCT
GGTTGGAGACTATTTTTTGACGTGTTTTAAGCGCATTCGGACGAACCTGCATATACACCA
CACATGAA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[149-237] 4.84E-24
Gene3D
HMG_box_dom_sf (IPR036910) - T[164-244] 3.9E-24
SMART
HMG_box_dom (IPR009071) - T[165-235] 1.1E-19
ProSiteProfiles
HMG_box_dom (IPR009071) - T[166-234] 19.588
Pfam
HMG_box_dom (IPR009071) - T[166-234] 1.6E-20

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX11_HUMAN 69.62 % 129 2.07E-32
SOX4_HUMAN 70.886 % 130 7.13E-33
SOX12_HUMAN 70 % 127 1.06E-32