- Molecular Tool 'Mitf>Twist' >
- Transcript 'KH2012:KH.C7.477.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.477.v1.C.nonSL2-1
Possible name(s)
MYB; MYBL1; SNAPC4
Gene model
Location
KhC7 [5,876,151 / 5,884,663]
Amino acid sequence
Length: 907
>KH.C7.477.v1.C.nonSL2-1
QNNFMDFRSSDEEIAEDQLRLQLQTFPLDLNFEEEESDDNEDINETFEPTSPQPTTTFDA
VSQSGEDTQEDDETEEEVIDLSVDLPPTPVNLLKLNLAYQEVIEQEITKVKQLLQENHCQ
TSILIESEQRMNIKSRYKMIVPGYSFMRTPFFKDKEGNGPTNIEITRRASDVGELFERNA
MPPGKWKKPTLQALISGVEREARRHVTEPLLSKLEYLNDMLNGPDHEEVKQKISEVQKQI
DEKSKVPITGLLGDREREWDWDTIANIDLDMQATPANCACYWKSHLHPSINNDAWSKAEE
KNFTSILEKHTDRDWNWISKELNTGRTPLQCAQYYQRTLNKDFKRKPWTPEEDQQLVKCI
HRLKVGNCIPYTMVALNLNSRTNYQVVHRWSKTLDPFYKKTRWEPEEDGALLRAVSIYGE
KWARIRDLNIVPNRHDGQLRERYKNCLSNWKRGPWIKSEDRKLLKLVHEHGERWSLVARY
MGGRTDSQCVKRFNTIKRAVSMGRALIYNPSTTYSNNVHKIRKTLLEKISAETTPVKTEK
DNDNDKNKDKENGDDGPPEPDAPTDTPHKHLIKISSKPKQKVLPAQDALLNMSSNLSSRE
VLELYIELMKTRRGRRGGKMGIAGKMNHEDIQINFELKKFLEERYKPMKRQSRKLENDNL
GFCLKEITKNSKSISSKDIFIYYIKALNINAARALESIRIKKDKQREGKVTLRSVLRNEI
EAGNKAVGEMRKKMSKRNADSLTSSDITSDNTDITKQQSTSNKADSDVTNKSRAFARNLY
LPLCAPNRATTKAYYALVKDRERRVTQAKTILRLDDATDETSGGKFKTVDLLADMRARYD
YKVFRSRFNALFTWSTFLRSLVPYRRTGNDRVLRPAIRIKRPYYDVTIPSAKRHKPNDST
IDNESSV
Nucleotide sequence
Length: 2,781
>KH2012:KH.C7.477.v1.C.nonSL2-1
TCAAAACAATTTTATGGATTTTAGAAGCAGTGATGAAGAAATTGCGGAAGATCAGCTTCG
ATTGCAACTGCAAACGTTTCCACTCGACCTTAATTTCGAAGAAGAAGAGAGCGATGACAA
TGAAGATATAAATGAGACGTTTGAACCAACTTCACCCCAACCTACAACAACATTCGATGC
CGTCAGCCAATCAGGTGAAGACACGCAAGAAGATGATGAAACGGAGGAGGAGGTCATCGA
CCTCTCAGTTGACCTCCCCCCGACCCCCGTTAACTTGTTAAAACTAAACCTAGCGTACCA
AGAAGTTATCGAACAAGAGATAACGAAGGTGAAACAATTGTTGCAGGAAAATCATTGCCA
AACTTCCATATTGATCGAGTCGGAGCAACGAATGAACATTAAAAGTCGTTACAAGATGAT
TGTGCCCGGTTATTCGTTCATGAGGACCCCGTTTTTTAAGGATAAGGAAGGTAACGGTCC
AACGAATATCGAGATAACTCGTCGCGCTTCAGATGTCGGTGAATTATTCGAGCGTAACGC
CATGCCCCCGGGAAAGTGGAAGAAACCAACGCTTCAAGCGTTAATCAGTGGAGTGGAACG
TGAAGCGCGACGTCATGTGACCGAACCTTTGTTGTCGAAACTTGAATATTTGAACGACAT
GTTAAACGGACCCGACCATGAGGAAGTCAAACAGAAAATTTCCGAAGTTCAGAAACAAAT
TGATGAAAAAAGTAAAGTCCCAATAACTGGGTTGTTGGGCGATCGTGAGCGCGAGTGGGA
TTGGGACACGATAGCCAACATAGACCTGGATATGCAAGCTACTCCGGCTAACTGTGCGTG
TTACTGGAAGTCCCATCTTCATCCGTCTATTAACAATGATGCCTGGAGCAAAGCAGAAGA
AAAGAACTTCACATCAATACTTGAGAAACACACAGACCGAGATTGGAACTGGATATCGAA
GGAGTTAAACACGGGACGTACCCCGTTACAATGTGCACAGTATTACCAAAGAACGCTCAA
CAAGGACTTCAAAAGGAAGCCCTGGACACCAGAAGAAGACCAGCAATTGGTGAAATGCAT
CCATAGATTAAAAGTCGGGAATTGCATCCCGTACACAATGGTTGCATTAAACCTCAACTC
ACGAACAAACTACCAAGTCGTCCATCGATGGTCAAAAACGCTCGACCCCTTCTATAAAAA
AACAAGATGGGAGCCAGAAGAAGACGGGGCATTGTTGCGAGCGGTTAGCATATATGGGGA
AAAGTGGGCAAGAATACGTGACCTTAATATTGTTCCTAATCGACATGATGGTCAACTGAG
GGAAAGATATAAGAACTGCCTCAGCAACTGGAAGCGCGGCCCATGGATCAAATCAGAGGA
TCGCAAACTATTAAAGCTCGTACACGAGCATGGGGAACGGTGGTCGTTGGTTGCGAGGTA
CATGGGGGGGAGGACGGACTCGCAATGCGTGAAGAGATTTAATACGATTAAACGAGCTGT
AAGCATGGGCCGTGCATTAATCTACAATCCTTCTACCACGTATTCAAATAATGTTCACAA
GATTCGGAAAACTTTGTTGGAAAAAATATCCGCTGAGACAACCCCGGTTAAAACAGAAAA
AGACAACGACAACGATAAAAATAAAGATAAAGAAAATGGTGATGATGGTCCACCAGAGCC
AGATGCACCTACAGATACACCACACAAACATCTTATAAAAATATCTTCGAAACCGAAACA
AAAAGTTTTGCCGGCACAGGACGCTCTTCTGAATATGTCCAGCAACTTATCGAGCCGCGA
GGTGTTGGAATTATACATTGAATTGATGAAGACCAGACGTGGTAGAAGAGGGGGCAAGAT
GGGAATAGCGGGGAAGATGAATCACGAGGATATTCAGATCAATTTTGAACTTAAGAAGTT
TTTAGAGGAGAGGTACAAACCAATGAAACGACAATCGCGGAAACTCGAAAACGACAATCT
CGGATTTTGTTTGAAAGAAATCACCAAGAATTCAAAATCGATTTCGTCCAAAGATATTTT
TATTTATTATATAAAAGCTCTAAACATCAACGCAGCTCGAGCTCTAGAATCGATTCGTAT
CAAGAAAGATAAACAACGAGAGGGAAAAGTGACCTTGAGGTCGGTGCTACGGAACGAGAT
CGAGGCGGGAAACAAAGCTGTTGGTGAAATGAGGAAAAAAATGAGTAAACGAAATGCTGA
CTCATTAACCTCCAGTGACATCACAAGTGACAACACTGACATCACAAAACAACAATCGAC
GAGTAACAAAGCCGATAGTGATGTCACAAACAAATCTCGCGCATTCGCTCGGAACCTCTA
CCTCCCCCTGTGTGCGCCCAACCGTGCAACGACAAAAGCTTATTATGCGCTCGTTAAAGA
TCGCGAACGTCGAGTAACGCAAGCGAAGACGATCCTCCGACTCGATGATGCGACGGATGA
AACATCGGGAGGAAAATTTAAAACCGTTGATTTGTTGGCAGATATGAGGGCTAGATACGA
CTACAAGGTGTTCAGGTCACGCTTCAACGCTTTATTCACGTGGTCCACCTTCCTACGCTC
ATTGGTCCCCTACAGGAGGACGGGGAACGATCGCGTATTGCGCCCTGCTATTCGAATAAA
GCGGCCATATTATGACGTCACAATACCTAGTGCAAAACGTCACAAACCAAACGATTCAAC
GATCGACAATGAATCTTCTGTTTAACTATTATGACGTCATAATTATTATGTATTCACGAA
CATTTTTTATGTGACGTCATA
| PANTHER |
SNAPC4 (IPR031282) - T[37-491] 1.6E-64 |
| ProSiteProfiles |
Myb-like_dom (IPR017877) - T[287-339] 8.339 - T[395-445] 7.619 |
| SMART |
SANT/Myb (IPR001005) - T[291-341] 5.8E-8 - T[344-396] 8.6E-10 - T[399-449] 1.0E-5 - T[451-499] 3.1E-16 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[292-356] 9.97E-13 - T[340-399] 6.86E-9 - T[399-493] 5.86E-21 |
| CDD |
SANT/Myb (IPR001005) - T[294-339] 1.33315E-6 - T[347-394] 2.89605E-6 - T[454-497] 2.4419E-12 |
| ProSiteProfiles |
Myb_dom (IPR017930) - T[340-398] 16.455 - T[447-501] 18.711 |
| Pfam |
SANT/Myb (IPR001005) - T[400-446] 4.8E-6 - T[452-496] 7.0E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MYB_HUMAN | 29.412 % | 83.6 | 1.78E-16 |
| MYBA_HUMAN | 28.662 % | 85.9 | 4.47E-17 |
| SNPC4_HUMAN | 33.408 % | 212 | 1.37E-56 |