- Transcript 'KH2012:KH.C7.285.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.285.v1.C.SL1-1
Possible name(s)
CHRNA1; CHRNA3; CHRNA6
Gene model
Location
KhC7 [2,779,627 / 2,785,732]
Amino acid sequence
Length: 484
>KH.C7.285.v1.C.SL1-1
ISKLLEMIVLRLLVMGALAYVSVAKTRYDLSGDIMQGYDAKVRPSDSYNNSVKVVFKLVF
NQLLDVSEVNQKIETKLWVYHKWMDPRLSWVPEDYENLEYIYLPTTNLWLPELVLYNNAD
GDFAISQFTKAKVDYTGMVEWKPPAIFKSFCEIMVAEFPFDTQNCTMKIGPWSQGQDLLD
MVNSDWEVKDHMCEPPDETMYEESGEWLILKTGCWKHYIKYDCCRGPYVDMTYYFILQRR
PLYLVINILFPTMLFSYLTCAVFYLPSDAGEKITLSISLLLSLIVFLLVIVEAIPSTANG
VPLLCQYILFTMILVCLSIMITVGVLNVHYRGPATHVMSDRMKKIFMVWLPKFIYSSTMK
RLDPYKEEKMLAGRPPKPYKDISDLSGRSPKPDEPHLIGSDVKTAMDGVDYVSECYKDQR
EGQQKEDEWKYVAMVLDHFLLYIFILACVVGTVGIFGKRLLEFMSEQELFKNLGNECILK
CQSD
Nucleotide sequence
Length: 1,925
>KH2012:KH.C7.285.v1.C.SL1-1
ATTTCAAAACTTTTAGAGATGATAGTTTTGCGTTTACTGGTTATGGGTGCGCTTGCGTAT
GTGAGCGTGGCAAAAACCCGGTACGATTTATCAGGAGATATAATGCAGGGGTATGACGCT
AAAGTACGACCGAGTGACAGCTACAATAACTCGGTAAAAGTCGTGTTTAAGCTTGTGTTT
AATCAATTACTTGACGTGAGCGAAGTCAACCAAAAAATCGAAACGAAACTGTGGGTTTAT
CACAAGTGGATGGACCCTCGGTTAAGCTGGGTGCCAGAGGATTACGAAAACCTGGAGTAT
ATATATCTACCTACTACTAACTTGTGGCTGCCGGAGTTGGTTCTGTATAACAACGCCGAT
GGTGACTTTGCTATTTCTCAATTTACGAAAGCAAAAGTGGATTATACTGGAATGGTAGAA
TGGAAACCTCCGGCAATTTTTAAAAGCTTCTGCGAGATTATGGTGGCAGAGTTTCCATTT
GACACACAAAACTGTACGATGAAAATTGGCCCTTGGTCGCAAGGACAAGATTTACTGGAC
ATGGTAAATTCAGACTGGGAAGTCAAAGACCACATGTGCGAGCCCCCAGATGAAACAATG
TACGAGGAAAGCGGAGAATGGTTGATTCTTAAAACTGGTTGCTGGAAGCATTACATTAAA
TACGATTGCTGTCGAGGGCCGTACGTGGACATGACTTACTACTTCATATTGCAAAGACGG
CCTCTATATCTTGTTATCAACATTCTCTTTCCTACAATGCTGTTTTCGTATCTAACCTGC
GCTGTATTCTATCTGCCATCGGACGCTGGCGAAAAAATAACACTCAGTATTTCGCTTCTG
CTTTCACTGATTGTGTTCTTGCTCGTTATTGTTGAAGCGATTCCCTCAACCGCTAATGGA
GTCCCATTGCTATGCCAGTACATTCTATTTACTATGATATTGGTTTGCCTCTCTATTATG
ATAACAGTCGGTGTATTGAATGTACATTACCGTGGGCCTGCAACACATGTCATGTCGGAT
CGGATGAAAAAGATATTCATGGTGTGGCTTCCAAAATTCATCTATAGCTCGACAATGAAA
CGATTGGATCCTTACAAGGAAGAAAAAATGTTGGCTGGCAGACCTCCCAAACCTTACAAA
GATATTTCAGATTTATCTGGTCGTTCCCCAAAACCAGACGAACCACATTTAATTGGTAGC
GACGTTAAAACAGCTATGGACGGAGTAGATTATGTGTCAGAGTGTTATAAGGACCAACGC
GAAGGACAGCAGAAAGAAGACGAATGGAAATACGTCGCTATGGTGTTGGACCATTTTCTG
TTGTATATCTTTATACTGGCTTGCGTGGTTGGCACAGTCGGTATATTTGGCAAGCGGTTG
CTTGAATTTATGTCAGAACAAGAGCTTTTTAAAAACCTAGGCAACGAGTGCATTCTGAAA
TGCCAAAGTGATTAGGCTACTGTAAGACTGTATTTTAGACGGAACGCCATTCCGGAAGAT
TCATAGCGTATATATTTGGAACCTAACTGCTAACTCAGATTGCAAAAGGTTTAATCGCTG
TTATCTAATTCAAGCTACAGTTACTAAAATTCAGCCCTTAGTTACTGACGTTGGTTACTG
CATGATATAGCAATTTGTATTAATGCTAAAGTAATATGTCAGCTACACATACATAGTAAC
TTTTAGGAATACACTTGGCGTTTTGGTTGCATAAAATGTACTGCAAATTTGTAAAAAATT
ATTGGCGTATCTGCTTTTTGGCGCACCAGACTTTACAAGGCGTATGGCAACACAAAACAA
ACATTATGAAACGGATGTACTGTCTGCCTTTTACATGCAGTCTTGTGCTACCTAAGTATT
ATATTATATCGAATACGGGTAATACAGCCTCGTACACAGCGTGTTCATTACACTTTTTGT
AATAA
| PANTHER |
Neur_channel (IPR006201) - T[16-456] 1.5E-120 |
| Gene3D |
Neur_chan_lig-bd_sf (IPR036734) - T[24-241] 8.1E-68 |
| SUPERFAMILY |
Neur_chan_lig-bd_sf (IPR036734) - T[28-241] 1.57E-54 |
| Pfam |
Neur_chan_lig-bd (IPR006202) - T[29-241] 1.9E-57 |
| PRINTS |
Nicotinic_acetylcholine_rcpt (IPR002394) - T[61-77] 1.7E-17 - T[95-109] 1.7E-17 - T[113-125] 1.7E-17 - T[131-149] 1.7E-17 |
| PRINTS |
Neur_channel (IPR006201) - T[74-90] 2.0E-12 - T[107-118] 2.0E-12 - T[151-165] 2.0E-12 - T[235-247] 2.0E-12 |
| ProSitePatterns |
Neurotransmitter_ion_chnl_CS (IPR018000) - T[151-165] . |
| SUPERFAMILY |
Neuro-gated_channel_TM_sf (IPR036719) - T[241-457] 4.45E-58 |
| Pfam |
Neurotrans-gated_channel_TM (IPR006029) - T[249-359] 9.4E-38 - T[391-456] 8.6E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ACHA3_HUMAN | 40.417 % | 358 | 4.09E-119 |
| ACHA6_HUMAN | 39.44 % | 336 | 1.42E-110 |
| ACHA_HUMAN | 42.449 % | 391 | 2.78E-132 |