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TRANSCRIPT CARD

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  1. Transcript 'Moocul.CG.ELv1_2.S10...' > 
  2. Transcript 'KH2012:KH.C3.620.v3....' > 
  3. Transcript 'Boleac.CG.SB_v3.S406...' > 
  4. Transcript 'KH2012:KH.L18.5.v1.A...' > 
  5. Transcript 'KH2012:KH.C6.20.v2.A...'

Transcript Model

Transcript Id

KH2012:KH.C6.20.v2.A.nonSL4-1

Possible name(s)

LSM10; SNRPD1; SNRPD3

Gene model

KH2012:KH.C6.20

Location

KhC6 [1,079,025 / 1,080,733]

Sequences

Amino acid sequence

Length: 144

>KH.C6.20.v2.A.nonSL4-1
RSSKYFVVSFNSFSIFLSNSKVIMKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMN
THLKSVKMTVKNRDPVNLDTLSIRGNNIRYYILPDSLPLDTLLVDEGPKQPKGGFRDRGR
GRGRGRGRGRGVRGRGRGGPPRRF

Nucleotide sequence

Length: 668

>KH2012:KH.C6.20.v2.A.nonSL4-1
ACAAGTAACGTTCGTCAAAATATTTTGTCGTGAGTTTTAACTCATTTTCAATCTTTCTAA
GCAATTCAAAGGTTATCATGAAGCTTGCAAGATTTTTGATGAAACTTAGTCACGAAACTG
TGACAATTGAATTGAAAAATGGAACACAAGTGCATGGAACTATTACTGGTGTTGACATCT
GCATGAACACACATTTAAAATCGGTGAAAATGACAGTAAAGAACCGAGATCCCGTAAACC
TGGACACTTTGAGTATTCGTGGCAACAATATCCGTTATTACATCCTCCCAGACAGTCTTC
CCCTTGATACACTGCTAGTGGATGAAGGACCAAAGCAACCTAAAGGAGGATTTAGAGATC
GTGGAAGGGGTCGTGGTCGAGGACGTGGGCGTGGTCGTGGAGTTCGTGGGCGTGGCAGAG
GCGGACCACCACGTCGATTTTAAACCAGAAAAATCATTCACTCATCTCTATCTTACGTAT
ATTACACTTGAAGTAGAATGGATAATTTCATTCAATCTTTAGGTTTACGTTTATGGAGAT
GGACTTATTTGGATATTTGAAAATCGTGACTTTTATTGAATAAAACACCTGCTGCCGAGT
TTTATAATTGAAGACGTTCGTTTTAGTGTAGTTTTTGTTGTGTCAAATTAAATGTAACGT
AAAAGCAA

InterProScan

PANTHER
LSm4/Sm_D1/D3 (IPR027141) - T[24-128] 1.9E-49
CDD
Sm_D1 (IPR034102) - T[25-110] 6.21856E-60
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[28-142] 3.89E-27
Pfam
LSM_dom_euk/arc (IPR001163) - T[28-92] 2.5E-18
SMART
LSM_dom_euk/arc (IPR001163) - T[28-93] 1.9E-17

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMD1_HUMAN 87.209 % 159 2.44E-51