- Transcript 'KH2012:KH.C6.198.v1....'
Transcript Model
Transcript Id
KH2012:KH.C6.198.v1.A.SL1-1
Possible name(s)
ADGRB2; HMCN1; THBS1
Gene model
Location
KhC6 [1,143,982 / 1,149,431]
Amino acid sequence
Length: 619
>KH.C6.198.v1.A.SL1-1
DIVLRLRHFKRMDKTCVLILLIVATVSAQLDIPADQCQCWVPTYKRAPCNVYSPNMGRTQ
CEGMGCCYHESGQMNTPTCYRRTAQCPPRQCLIPASERSVCITANLGPNRCLNGQCCYDG
GSAPHCYRPIGGQPVPAYDTSLRLSMFSNGNENTPFSPKGYLHHGNAMLVVGGCATAVIP
CGTSKTNRDQCSRFMCCWIPSRRLPSGQACFTSVYNFIKFPFAKWDNWGEWTTCTASACG
TGTQTRTRTCIDGQVGQNGCEGSETDTQACQGSCTISWGAWAQWSTCQSAEPTCTSGTRS
RSRVCVNQAGVTQANTACTTGAASESETCNAQLCPAYTQWAGSCSVTCGGGIQNRARTCT
TTPTGPIPSSCTTIAGQACNTQSCNKDLDIMFIVDSSQQLDSCSAKEASLGQVAPFTPAG
GLLTTANFPNFVQQKTFLTSFFSIYKTVVAGRTNVGVLSRSGSCAAATSTNYHKIKALSD
TYVPLQAEAAISYLCGFPDFFSTLGCGIEYIKTGNTNNPDVIVEILPDITTLSSTLLQVY
QNNVASINTIAGATRVLTVTAADLSLSSMTQANIDANVLFGKQWACRSTTPPATCIYYLG
TVYNPAQVIANFILATADL
Nucleotide sequence
Length: 2,139
>KH2012:KH.C6.198.v1.A.SL1-1
CGAGGTATAAGCATTGAGACATTGTGCTGCGACTTCGACATTTTAAAAGAATGGACAAAA
CTTGCGTTCTTATACTGCTTATTGTAGCTACTGTTTCAGCTCAACTAGATATACCAGCGG
ACCAATGTCAGTGTTGGGTACCTACTTACAAGAGAGCGCCATGTAACGTATATAGTCCAA
ATATGGGACGAACTCAATGTGAAGGCATGGGATGCTGTTACCACGAAAGTGGGCAAATGA
ATACACCAACATGCTATAGACGTACAGCCCAATGCCCACCACGACAATGCCTTATTCCAG
CCTCCGAAAGGAGTGTGTGTATAACAGCAAATCTCGGTCCAAACAGATGTTTAAACGGTC
AGTGCTGTTATGACGGCGGATCTGCACCGCACTGCTACAGGCCTATTGGCGGTCAACCAG
TGCCTGCCTACGACACCAGTTTAAGACTTAGCATGTTTTCGAATGGTAACGAAAACACAC
CGTTCTCACCAAAGGGATATTTACACCACGGCAATGCAATGTTGGTGGTTGGAGGATGCG
CAACTGCAGTCATTCCATGCGGGACATCGAAAACGAACAGAGACCAGTGTAGCAGATTCA
TGTGTTGTTGGATTCCAAGCAGGAGGCTACCATCAGGACAAGCTTGCTTTACCTCCGTTT
ACAACTTTATCAAGTTTCCATTTGCAAAGTGGGATAACTGGGGTGAATGGACTACATGCA
CTGCTTCAGCTTGTGGAACTGGAACACAAACCAGAACAAGGACTTGTATTGATGGACAAG
TTGGACAAAATGGCTGTGAAGGAAGTGAAACTGATACACAAGCATGCCAAGGTTCTTGTA
CAATATCATGGGGAGCGTGGGCTCAGTGGTCTACATGCCAAAGTGCTGAGCCAACTTGCA
CATCGGGCACAAGGTCCAGATCTCGTGTATGTGTCAACCAAGCTGGTGTCACTCAAGCAA
ATACAGCGTGCACAACAGGTGCTGCATCAGAGAGCGAAACATGCAATGCCCAATTATGTC
CTGCTTATACTCAATGGGCTGGATCTTGCAGTGTAACCTGTGGAGGTGGGATCCAAAACC
GTGCCCGAACTTGCACAACGACGCCTACAGGACCCATTCCATCATCATGTACTACTATTG
CTGGACAAGCATGCAACACCCAGAGCTGCAACAAAGACTTAGACATCATGTTCATTGTGG
ACTCTTCACAGCAACTTGACTCGTGCTCAGCAAAAGAGGCATCACTTGGACAAGTTGCGC
CATTTACACCTGCAGGAGGACTTCTAACAACAGCCAATTTCCCCAACTTTGTTCAACAAA
AAACTTTTCTTACTTCGTTTTTCAGCATCTACAAGACTGTAGTTGCTGGCCGAACTAACG
TTGGGGTGTTGTCACGCTCAGGAAGCTGTGCAGCAGCTACTTCTACAAACTACCACAAAA
TTAAAGCACTGAGTGACACATATGTGCCGCTACAGGCTGAAGCAGCTATTTCTTACCTCT
GTGGGTTCCCAGATTTTTTCTCAACCCTTGGTTGTGGTATTGAATACATCAAAACTGGCA
ACACTAATAACCCAGATGTTATTGTTGAGATTCTGCCCGATATTACTACCTTGTCTTCAA
CTCTTTTACAGGTGTACCAAAATAATGTGGCTTCAATAAACACAATAGCTGGCGCAACAA
GAGTATTGACTGTTACTGCGGCAGATCTTTCGCTATCTTCGATGACGCAGGCCAACATTG
ATGCAAATGTACTATTTGGCAAGCAATGGGCATGTAGAAGCACTACACCACCAGCAACCT
GTATATATTATCTTGGAACTGTATATAATCCAGCACAAGTTATTGCTAACTTCATCTTAG
CAACAGCAGATTTGTAAAAAGTCTAATTTACATTGACTACCCTGCAAAATGCGGTGTCAG
TGAATCATAACCAATTTTTAACTGAGAAGTTAAAAGAAAGAAATGCTTTTGAACCTACAC
TAGTGAAAGAGCAACTAAATTTTATCAGCTAAAAAGTTATGCTTACCCTGATTGTGTTTG
AAAAATAACACTTTTTCTACTTTTTTATTGAATTTGTGCCATTTTTCTTTTGCTTGTTTG
TTTAATTGATTGAATATTTGAATACACCAAAGACTTACC
| ProSiteProfiles |
P_trefoil_dom (IPR000519) - T[35-83] 11.624 - T[89-130] 9.887 |
| Pfam |
P_trefoil_dom (IPR000519) - T[39-81] 2.0E-6 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[222-271] 9.973 - T[275-335] 11.078 - T[336-385] 8.22 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[223-274] 1.6E-8 - T[275-334] 1.3E-6 - T[336-388] 2.1E-7 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[224-270] 1.57E-8 - T[277-334] 3.01E-6 - T[342-384] 3.27E-5 |
| SMART |
TSP1_rpt (IPR000884) - T[225-275] 1.0E-6 - T[278-335] 2.0E-4 - T[337-385] 0.0062 |
| Pfam |
TSP1_rpt (IPR000884) - T[227-272] 2.9E-6 - T[280-334] 7.1E-5 - T[342-384] 2.5E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 36.207 % | 92.4 | 3.59E-19 |
| AGRB2_HUMAN | 34.32 % | 87.8 | 8.68E-18 |
| TSP1_HUMAN | 36.257 % | 85.9 | 2.74E-17 |